Gene Shewana3_0016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0016 
SymbolglyS 
ID4477455 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp18813 
End bp20879 
Gene Length2067 bp 
Protein Length688 aa 
Translation table11 
GC content49% 
IMG OID639724532 
Productglycyl-tRNA synthetase subunit beta 
Protein accessionYP_867667 
Protein GI117918475 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0751] Glycyl-tRNA synthetase, beta subunit 
TIGRFAM ID[TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.27788e-08 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATTTTG AAAACTTACT CATCGAGTTA GGCACTGAAG AACTGCCGCC AAAGGCGCTG 
CGTAAACTGG CTGAGTCTTT CTTAGCGAAT TTTACCGAAG AATTAACCAA AGCCGATTTA
GCTTTTAAAT CAGCTGTTTG GTATGCAGCA CCCCGTCGTC TCGCCATTAA TGTGACAGAA
CTAGCACTTG CTCAAGCGGA CAAAATCGTT GAAAAACGCG GCCCAGCTGT CAGCTCAGCA
TTCGATGCCG AAGGTAAACC AACGAAAGCC GCAGAAGGTT GGGCACGTGG TAACGGTATT
ACCGTTGACC AAGCCGAGCG TTTAGTGACC GATAAAGGTG AATGGCTGGT TTATAACGCC
AAAGTCGAAG GCGTTGAAAC CAAAAGCTTA ATCGCTGCGA TGGCGCAACG TGCGCTGGAT
AAGTTACCCA TTCCTAAGCC AATGCGCTGG GGAAGCAGCA AGACACAATT CATTCGCCCT
GTTCACACAG CCACTATGCT GTTAGGCAGT GAGTTAATCG AAGGTGAATT ACTTGGCATT
AAATCGGCAC GTAATGTTCG TGGTCACCGC TTTATGGGTA CAGGCTTCGA GCTTGACCAT
GCAGACAACT ACCTGACGCT ACTGAAAGAA AAAGGTAAAG TCATCGCCGA TTACGAAAGC
CGTAAAGCCT TAATTAAAGC CGATGCAGAA AAAGCGGCCG CTAAGATTGG TGGCACCGCA
GATATCGAAG ATGACCTGCT GGAAGAAGTC ACCTCTTTGG TTGAATGGCC AGTCGTATTA
ACCGCAAGCT TTGAAGAGAA GTTCTTGAAC GTGCCTTCAG AAGCCTTGGT TTATACGATG
AAGGGCGATC AGAAATACTT CCCAGTGTTC GATGATGCAG GTAAGTTACT GCCAAACTTC
ATCTTTGTCG CTAACATAGA ATCAAAAGAT CCGGCACAAA TTATTGCGGG TAACGAGAAG
GTGGTTCGTC CACGCTTGGC CGATGCCGAG TTCTTCTTCA ATACCGACAA AAAGCACACG
CTGGAATCAC GCTTACCGAG TCTTGAGACC GTCTTGTTCC AACAACAACT AGGTACTTTA
AAAGACAAAG TCACTCGTAT CTCTGCCCTA GCCGCCTTTA TTGCCGAGCA AACTGGCGCT
AACGCCGTTG ATGCAGCCCG TGCTGGTTTA TTGTCTAAAA CAGACTTAAT GACCAATATG
GTGATGGAGT TTACCGATAC TCAAGGCACT ATGGGCATGC ATTACGCCCG CCTAGATGGT
GAAACTGAAG CCGTCGCCTT AGCCATGGAA GAGCAATACA AGCCAAAATT CTCTGGCGAT
ACAGTTCCTA CTGCAGCGGT ATCTTGCGCA GTAGCCTTAG CGGATAAACT CGATACCTTA
GTCGGTATCT TCGGTATTGG TCAGGCACCT AAGGGCGCTG CCGACCCATT CGCACTGCGC
CGCGCCGCTA TCGGTGTGCT ACGCATTATC GTTGAGAACA AGTTGCCACT AGACTTAGTG
ACCCTGATTG CCAAGGCTCA AGAACTCCAT GGCACTAACT TAAGCAACGC GAATGCAAGC
GATGAAGTGC TTGAGTTCCT AATGGCGCGT TTCCGCGCTT GGTACCAAGA TAAAGGTATC
GAGGTTGACG TGATCCTCGC CGTATTAGCA CGTCGCCCAA CTCGCCCAGC TGATTTTGAT
AGCCGTATCA ATGCGGTATC ACACTTCAGA AGCTTAGAAG CCTCTAGCGC TCTGGCAGCG
GCGAATAAGC GTGTGTCTAA CATTCTGGCG AAAGTGGAAG GCGAATTACC CACCACGATT
AACTCAGCTC TGTTAGCCGA AGCCGCAGAA CAAGCATTAG CCGCTAAGCT TGCCGAACTG
CAGCCTCAAC TCGCTCCGCT GTTCGCTAAT GCTGATTACC AACAGGCATT AACACTGCTG
GCGAGCTTAC GTGAAAGCGT TGACCAGTTC TTCGAAGACG TGATGGTTAT GGCGGACGAC
GAAGCATTGA AAAACAACCG CTTAGCTCTG CTAAATAACC TACGTGAACA GTTCTTACAT
GTAGCGGATA TTTCTCTGCT TCAGTAA
 
Protein sequence
MNFENLLIEL GTEELPPKAL RKLAESFLAN FTEELTKADL AFKSAVWYAA PRRLAINVTE 
LALAQADKIV EKRGPAVSSA FDAEGKPTKA AEGWARGNGI TVDQAERLVT DKGEWLVYNA
KVEGVETKSL IAAMAQRALD KLPIPKPMRW GSSKTQFIRP VHTATMLLGS ELIEGELLGI
KSARNVRGHR FMGTGFELDH ADNYLTLLKE KGKVIADYES RKALIKADAE KAAAKIGGTA
DIEDDLLEEV TSLVEWPVVL TASFEEKFLN VPSEALVYTM KGDQKYFPVF DDAGKLLPNF
IFVANIESKD PAQIIAGNEK VVRPRLADAE FFFNTDKKHT LESRLPSLET VLFQQQLGTL
KDKVTRISAL AAFIAEQTGA NAVDAARAGL LSKTDLMTNM VMEFTDTQGT MGMHYARLDG
ETEAVALAME EQYKPKFSGD TVPTAAVSCA VALADKLDTL VGIFGIGQAP KGAADPFALR
RAAIGVLRII VENKLPLDLV TLIAKAQELH GTNLSNANAS DEVLEFLMAR FRAWYQDKGI
EVDVILAVLA RRPTRPADFD SRINAVSHFR SLEASSALAA ANKRVSNILA KVEGELPTTI
NSALLAEAAE QALAAKLAEL QPQLAPLFAN ADYQQALTLL ASLRESVDQF FEDVMVMADD
EALKNNRLAL LNNLREQFLH VADISLLQ