Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0006 |
Symbol | |
ID | 4477445 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 6841 |
End bp | 8466 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 639724522 |
Product | protein translocase subunit yidC |
Protein accession | YP_867657 |
Protein GI | 117918465 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000101193 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000873101 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGGAATCTC AACGCAATAT ATTGCTAATA GGACTACTGT TTGTCAGCTT TTTGCTGTGG CAACAGTGGC AAGCAGACAA AGCTCCAAAA CCCGTTGCAA CCGAATCGTC TGTAGTGGCG AATGCAACCA CAAATCACAG TGCTGATGTT CCAGAAGCAG ACACAAGTGT CCCAGCAGCC TTAACGGCAA CGCAAAATCT GATCACAGTT AAAACCGATC AGCTCGATGT ACAAATCAAC CCAGTGGGTG GTGACATCGT TTTTGCAGCT CTGGTTTCAC ACAAACTGGA ACAGGGTAAA GACCAGCCAT TTGTTTTGCT TGAGCAAACC AAAGATTTCA CCTATATCGC TCAGAGTGGC CTGATTGGCC GTGATGGTAT CGATAGCAGT GCTAAAGGTC GCGCCGCATT TGCTGCCAAC AAAACTGAAT TCACCTTAGC CGATGGCCAA GACACCTTAG AAGTACCACT GACCTATGTG GCTGATAACG GTGTGACTTA CACCAAAGTG TTTGTCTTCC ATCGTGGCAA GTTTAACGTT GATATCGATT ACAAAATCAA CAACACTTCA GCTGCTCCAT TACAAGTTCA GATGTACGGT CAGATTAAAC AGACCATCAA GCCATCTGAA AGCAGCATGA TGATGCCAAC TTACCGTGGC GCCGCGTTCT CGACTCAAGA TGTACGTTAC GAAAAGTACA AGTTTGAAGA TATGAGCAAG AGCAACCTCA ATCAACCGAC TCTCGGTGGT TGGGCGGCGA TGTTGCAACA TTACTTCGTA TCTGCTTGGA TCCCACCAGC AACCGACAGC AACACCATTT TCTCGAGTGT CAGTGCAGGC GGTTTAGCTA ACATAGGTTT CCGTGGCGCG GTATACGATA TTGCACCGGG TGCGACTCAA GAAATTAGCT CACAATTTTA TGTTGGTCCT AAGGATCAAA AAGCGCTATC TGCGTTATCT GATACCTTAA ACCTAGTTGT TGATTACGGT TTCCTTTGGT GGTTAGCCGT GCCAATCCAC TGGTTATTGA TGTTCTATCA ATCCTTTGTG GGTAACTGGG GTGTGGCAAT TATCCTGATC ACCTTAACCG TTCGTGGTTT ACTGTTCCCG CTCACTAAAG CGCAGTACAC CTCAATGGCG AAGATGCGTA ACCTACAGCC AAAACTGCAG GATCTAAAAG AACGCTTCGG CGATGACCGT CAAAAGATGG GTCAAGCCAT GATGGAACTG TACAAGAAGG AAAAAGTGAA CCCTATGGGT GGCTGTTTAC CTATCCTATT ACAGATGCCA ATTTTCATTG CCTTGTACTG GGTATTGTTA GAAAGCTTCG AGCTGCGTCA CGCGCCATTT ATGTTATGGA TCCACGACTT ATCTGTACAA GATCCATACT ACATTCTGCC GCTGTTGATG GGTGCGTCTA TGTTTGTGAT GCAAAAAATG CAACCCATCG CACCGACCAT GGACCCAATG CAAGTGAAGA TGATGCAATG GATGCCAATG ATCTTTACAG TATTCTTCCT GTGGTTCCCA TCGGGTCTGG TACTGTACTG GTTAGTGGGT AACATTGTTG CCATCATCCA GCAGAAGATT ATTTATGCAG GTCTAGAGAA AAAAGGCTTA AAATAA
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Protein sequence | MESQRNILLI GLLFVSFLLW QQWQADKAPK PVATESSVVA NATTNHSADV PEADTSVPAA LTATQNLITV KTDQLDVQIN PVGGDIVFAA LVSHKLEQGK DQPFVLLEQT KDFTYIAQSG LIGRDGIDSS AKGRAAFAAN KTEFTLADGQ DTLEVPLTYV ADNGVTYTKV FVFHRGKFNV DIDYKINNTS AAPLQVQMYG QIKQTIKPSE SSMMMPTYRG AAFSTQDVRY EKYKFEDMSK SNLNQPTLGG WAAMLQHYFV SAWIPPATDS NTIFSSVSAG GLANIGFRGA VYDIAPGATQ EISSQFYVGP KDQKALSALS DTLNLVVDYG FLWWLAVPIH WLLMFYQSFV GNWGVAIILI TLTVRGLLFP LTKAQYTSMA KMRNLQPKLQ DLKERFGDDR QKMGQAMMEL YKKEKVNPMG GCLPILLQMP IFIALYWVLL ESFELRHAPF MLWIHDLSVQ DPYYILPLLM GASMFVMQKM QPIAPTMDPM QVKMMQWMPM IFTVFFLWFP SGLVLYWLVG NIVAIIQQKI IYAGLEKKGL K
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