Gene Shewana3_0006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0006 
Symbol 
ID4477445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp6841 
End bp8466 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content46% 
IMG OID639724522 
Productprotein translocase subunit yidC 
Protein accessionYP_867657 
Protein GI117918465 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0706] Preprotein translocase subunit YidC 
TIGRFAM ID[TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000101193 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000000873101 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGAATCTC AACGCAATAT ATTGCTAATA GGACTACTGT TTGTCAGCTT TTTGCTGTGG 
CAACAGTGGC AAGCAGACAA AGCTCCAAAA CCCGTTGCAA CCGAATCGTC TGTAGTGGCG
AATGCAACCA CAAATCACAG TGCTGATGTT CCAGAAGCAG ACACAAGTGT CCCAGCAGCC
TTAACGGCAA CGCAAAATCT GATCACAGTT AAAACCGATC AGCTCGATGT ACAAATCAAC
CCAGTGGGTG GTGACATCGT TTTTGCAGCT CTGGTTTCAC ACAAACTGGA ACAGGGTAAA
GACCAGCCAT TTGTTTTGCT TGAGCAAACC AAAGATTTCA CCTATATCGC TCAGAGTGGC
CTGATTGGCC GTGATGGTAT CGATAGCAGT GCTAAAGGTC GCGCCGCATT TGCTGCCAAC
AAAACTGAAT TCACCTTAGC CGATGGCCAA GACACCTTAG AAGTACCACT GACCTATGTG
GCTGATAACG GTGTGACTTA CACCAAAGTG TTTGTCTTCC ATCGTGGCAA GTTTAACGTT
GATATCGATT ACAAAATCAA CAACACTTCA GCTGCTCCAT TACAAGTTCA GATGTACGGT
CAGATTAAAC AGACCATCAA GCCATCTGAA AGCAGCATGA TGATGCCAAC TTACCGTGGC
GCCGCGTTCT CGACTCAAGA TGTACGTTAC GAAAAGTACA AGTTTGAAGA TATGAGCAAG
AGCAACCTCA ATCAACCGAC TCTCGGTGGT TGGGCGGCGA TGTTGCAACA TTACTTCGTA
TCTGCTTGGA TCCCACCAGC AACCGACAGC AACACCATTT TCTCGAGTGT CAGTGCAGGC
GGTTTAGCTA ACATAGGTTT CCGTGGCGCG GTATACGATA TTGCACCGGG TGCGACTCAA
GAAATTAGCT CACAATTTTA TGTTGGTCCT AAGGATCAAA AAGCGCTATC TGCGTTATCT
GATACCTTAA ACCTAGTTGT TGATTACGGT TTCCTTTGGT GGTTAGCCGT GCCAATCCAC
TGGTTATTGA TGTTCTATCA ATCCTTTGTG GGTAACTGGG GTGTGGCAAT TATCCTGATC
ACCTTAACCG TTCGTGGTTT ACTGTTCCCG CTCACTAAAG CGCAGTACAC CTCAATGGCG
AAGATGCGTA ACCTACAGCC AAAACTGCAG GATCTAAAAG AACGCTTCGG CGATGACCGT
CAAAAGATGG GTCAAGCCAT GATGGAACTG TACAAGAAGG AAAAAGTGAA CCCTATGGGT
GGCTGTTTAC CTATCCTATT ACAGATGCCA ATTTTCATTG CCTTGTACTG GGTATTGTTA
GAAAGCTTCG AGCTGCGTCA CGCGCCATTT ATGTTATGGA TCCACGACTT ATCTGTACAA
GATCCATACT ACATTCTGCC GCTGTTGATG GGTGCGTCTA TGTTTGTGAT GCAAAAAATG
CAACCCATCG CACCGACCAT GGACCCAATG CAAGTGAAGA TGATGCAATG GATGCCAATG
ATCTTTACAG TATTCTTCCT GTGGTTCCCA TCGGGTCTGG TACTGTACTG GTTAGTGGGT
AACATTGTTG CCATCATCCA GCAGAAGATT ATTTATGCAG GTCTAGAGAA AAAAGGCTTA
AAATAA
 
Protein sequence
MESQRNILLI GLLFVSFLLW QQWQADKAPK PVATESSVVA NATTNHSADV PEADTSVPAA 
LTATQNLITV KTDQLDVQIN PVGGDIVFAA LVSHKLEQGK DQPFVLLEQT KDFTYIAQSG
LIGRDGIDSS AKGRAAFAAN KTEFTLADGQ DTLEVPLTYV ADNGVTYTKV FVFHRGKFNV
DIDYKINNTS AAPLQVQMYG QIKQTIKPSE SSMMMPTYRG AAFSTQDVRY EKYKFEDMSK
SNLNQPTLGG WAAMLQHYFV SAWIPPATDS NTIFSSVSAG GLANIGFRGA VYDIAPGATQ
EISSQFYVGP KDQKALSALS DTLNLVVDYG FLWWLAVPIH WLLMFYQSFV GNWGVAIILI
TLTVRGLLFP LTKAQYTSMA KMRNLQPKLQ DLKERFGDDR QKMGQAMMEL YKKEKVNPMG
GCLPILLQMP IFIALYWVLL ESFELRHAPF MLWIHDLSVQ DPYYILPLLM GASMFVMQKM
QPIAPTMDPM QVKMMQWMPM IFTVFFLWFP SGLVLYWLVG NIVAIIQQKI IYAGLEKKGL
K