| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0005 |
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| Symbol | trmE |
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| ID | 4477444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 5376 |
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| End bp | 6737 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639724521 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_867656 |
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| Protein GI | 117918464 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.135343 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000014804 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGACAACTG ACACTATCGT GGCACAGGCC ACCGCGCCCG GACGGGGCGG CGTGGGTATC
ATTCGTATCT CTGGTGATAA GGCAACCGAT GTGGCCATGG CCGTATTGGG TCATTTACCT
AAACCCCGTT ACGCCGATTA CTGCGACTTT AAAAATGCTT CAGGCCAAGT GATAGACCAA
GGTATCGCAC TGTTTTTTAA AGGCCCTAAT TCCTTCACCG GTGAAGACGT ATTAGAGCTG
CAGGGCCACG GTGGTCAAAT CGTTCTCGAT ATGCTGATCA AGCGCGTATT AGAAGTCGAA
GGCATTCGCA TCGCCAAACC AGGCGAGTTT AGCGAACAGG CCTTTATGAA CGACAAGCTA
GACTTAACCC AGGCCGAAGC CATTGCCGAC CTTATCGATG CCACCAGTGA GCAAGCCGCC
AAAAGCGCGC TGCAATCACT GCAAGGTGAG TTTTCGAAGG AAGTCCATGA GCTGGTGGAT
CAAGTCACCC ATCTGCGTTT ATACGTCGAA GCCGCGATTG ATTTCCCCGA TGAAGAAGTC
GACTTTTTAA GTGACGGCAA AATTGCCAAC GCGCTCTACA AAATCATCGA TAAACTCAGC
GCCGTGCAGG CCAGTGCCAA GCAAGGCTCG ATTATCCGCG AAGGGATGAA AGTGGTCATT
GCTGGCAGGC CAAATGCGGG TAAATCGAGT CTGCTTAACG CCCTAGCGGG TAAAGAGTCA
GCGATTGTCA CCGAAATTGC TGGCACCACC CGTGACGTAT TGCGCGAACA TATCCATTTA
GATGGTATGC CACTACATAT TATCGACACT GCAGGTTTAC GTGACACCAC TGACACGGTT
GAACAAATCG GTATCGAACG CGCGTGGAAC GAAATCAACA GCGCCGATCG GGTGTTATTT
ATGGTCGATG GCACCACCAC GGATGCGGTC GATCCCCATG ATATTTGGCC CGATTTTATC
AATCGCCTGC CCGCCAATTT AGGCGTGACC GTTGTCCGCA ATAAGGCCGA TCTCACCGGT
GAGAACCTCG CCATGACCGA AGAAAAAGGT TACAGCGTGT ATCGGATCTC GGCCAAAACC
GGTCTAGGCG TAGAGGAATT AAAGCAACAC CTTAAATCCT TGATGGGCTA TAAGAGTAAT
CTCGAAGGTG GCTTTATCGC CCGTCGCCGC CACCTCGAAG CATTAGATGT TGCCGCAAGC
CATCTACAAC TCGGTAAAGA ACAATTAGAG ATTTACCTCG CAGGCGAACT GTTAGCGGAA
GAACTGAGAA TGGCGCAATT AGCCCTGTCT GAAATCACCG GCCGCTTCAC CTCAGACGAT
CTATTGGGCA AAATTTTCAG CTCATTCTGT ATCGGAAAGT AA
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| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRISGDKATD VAMAVLGHLP KPRYADYCDF KNASGQVIDQ
GIALFFKGPN SFTGEDVLEL QGHGGQIVLD MLIKRVLEVE GIRIAKPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALQSLQGE FSKEVHELVD QVTHLRLYVE AAIDFPDEEV
DFLSDGKIAN ALYKIIDKLS AVQASAKQGS IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTTDTV EQIGIERAWN EINSADRVLF
MVDGTTTDAV DPHDIWPDFI NRLPANLGVT VVRNKADLTG ENLAMTEEKG YSVYRISAKT
GLGVEELKQH LKSLMGYKSN LEGGFIARRR HLEALDVAAS HLQLGKEQLE IYLAGELLAE
ELRMAQLALS EITGRFTSDD LLGKIFSSFC IGK
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