| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3476 |
|---|
| Symbol | smpB |
|---|
| ID | 4481948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 4337920 |
|---|
| End bp | 4338372 |
|---|
| Gene Length | 453 bp |
|---|
| Protein Length | 150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639724224 |
|---|
| Product | SsrA-binding protein |
|---|
| Protein accession | YP_867367 |
|---|
| Protein GI | 117926750 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0691] tmRNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0920584 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTCC GACTGATCGC CGAAAATCGT AAAGCCCGTT TCAACTATGA AATTATCGAA
AAAATCGAGG CGGGCATTGT GCTGCAAGGC ACTGAGGTTA AGTCTATTCG TGCCGGTAAA
ATGACACTGG CAGACTCCTA TGCGGTGGTA AACCGTGAAG AGCTCTACTG GCTTAATGGG
CAGATTGCCC ACTATGAACA CGGCAACATT CATAACCACG AACCCTTTCG CAGCCGTAAA
TTGCTGCTTA GGCACAAAGA GATCAGCCGC CTCATCGGTC TTGTCAAAGA GAAGGGGCTC
TCCATTATCC CCCTGCGGGC CTACTGGAAA GGCAGCAAAG TTAAGCTAGA GTTGGGTATC
GCCAAGGGTA AAAAGCTCTA CGACAAGCGG GCCACCACCA AAGAGCGTGA TTGGCAGCGT
GAAAAGCAGC GCATTCTCAA AACCAACCAC TAA
|
|---|
| Protein sequence | MTFRLIAENR KARFNYEIIE KIEAGIVLQG TEVKSIRAGK MTLADSYAVV NREELYWLNG
QIAHYEHGNI HNHEPFRSRK LLLRHKEISR LIGLVKEKGL SIIPLRAYWK GSKVKLELGI
AKGKKLYDKR ATTKERDWQR EKQRILKTNH
|
|---|
| |