Gene Mmc1_3428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_3428 
Symbol 
ID4483880 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp4280352 
End bp4281275 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content56% 
IMG OID639724177 
Product4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
Protein accessionYP_867320 
Protein GI117926703 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTATTC TATTAGCGGA ACCACGGGGA TTTTGTGCCG GGGTTGATCG GGCCATTGCC 
ATTGTACTCA AAGCGCTGGA AAAATTTGGC CCGCCCATCT ATGTCCGCCA TGAAATTGTG
CATAACCGCT GGGTGGTGGA GCATCTACGC AACCAGGGTG CGGTGTTTGT GCATGAGTTG
GATGAAATCC CCGATGGTGC GGTAGCCATC TACTCCGCCC ATGGTGTCTC TAAAGCGGTA
CAAGCCGAGG GCGAGCGCCG TCCGTTGCAC ATTTTGGATG CCACCTGCCC ACTGGTCGAC
AAGGTCCACC GCGAGGCCGA ACGCCTGGAT CATGACCACT ACCAAGTGCT GCTCATCGGC
CATGCCGGGC ACCCCGAGGT TGAGGGTACC ATGGGCCAAC TGCAACAGGC GCGCATGAAA
CTGATCTCCC ATCCCGATGA CGTTGCACAG TTGCGGCTAA GTAACCCGCA AAAGGTGGCC
TACATTACCC AAACCACCCT CTCGGTGGAT GAGACCCGAG CGATGGTGGC GCAACTTAAA
GCCCGTTTTC CCACCATCAA AGAACCGGCT AAAGAGGATA TCTGTTATGC GACCCAAAAC
CGCCAAAATG CGGTCAAAGC ATTGGCGCAA GCATCGGATC TTATTCTTGT TTTAGGGGCA
CCAAACAGCA GCAACTCAAA CCGTTTACGC GAGGTGGCCG AACAGCACGG CTGCCGGGCT
TTCCTGATTG AAAACGCCAA AGATGTGGAA ATACAGTGGC TTGAAGGGGT TGAGACCCTG
GGCATTACCG CCGGGGCTTC GGCACCGGAA ATCTTAGTCG AAGAGCTGCT GGCGCATTTG
CACGCAGAGC AGCACCAGGT GGAACTGCTC TCGGTCACCA AAGAGTATTT GGCCTTTCCA
CTGCCCTTAG AACTGCGGGA GTAA
 
Protein sequence
MRILLAEPRG FCAGVDRAIA IVLKALEKFG PPIYVRHEIV HNRWVVEHLR NQGAVFVHEL 
DEIPDGAVAI YSAHGVSKAV QAEGERRPLH ILDATCPLVD KVHREAERLD HDHYQVLLIG
HAGHPEVEGT MGQLQQARMK LISHPDDVAQ LRLSNPQKVA YITQTTLSVD ETRAMVAQLK
ARFPTIKEPA KEDICYATQN RQNAVKALAQ ASDLILVLGA PNSSNSNRLR EVAEQHGCRA
FLIENAKDVE IQWLEGVETL GITAGASAPE ILVEELLAHL HAEQHQVELL SVTKEYLAFP
LPLELRE