| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3385 |
|---|
| Symbol | |
|---|
| ID | 4483321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 4218077 |
|---|
| End bp | 4221262 |
|---|
| Gene Length | 3186 bp |
|---|
| Protein Length | 1061 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639724133 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_867277 |
|---|
| Protein GI | 117926660 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATA CCCCTCACAC CCCCCCCAGC GCGGGGCACG ATCCCACCCA ATCCATGATT
GCCCGTCTGA TTGAGTGGTC CATCCACCAT CAGCTCATTG TGGTGATACT CACCCTTGGT
TTGGCTGTCG CGGGGGTGTT GGCGGTGCAG CGTACCCCAC TGGATGCCAT TCCCGATCTT
TCCGACACCC AGGTGATTAT CCGCACCGAG TTTCCCGGTC AAGCCCCGCA GATTGTGGAA
GATCTGGTTA CCTATCCCCT CTCCACCACC CTGCTTGGTC TACCCAAGAC TCAGGCGGTG
CGTGGTTTTT CCATGTTTGG CACCAGCTTT GTTTATGTCA TCTTTCAAGA TGGGGTGGAC
ATGTATTGGG CCCGTAGTCG GGTGGCCGAA GCCTTGGCCA CCGTGCAGAA AGATCTGCCC
GACAAGGCCA CCCCCCGCAT GGGACCAGAC GCCACCGGGG TGGGATGGAT CTTTCAATAT
GCGTTGGTAG ACCCCACCGG CCAACACGAT CTGGCGGAGC TGCGTGCGTT ACAGGATTGG
TTTTTAAAAT TTGAGCTGGC CACCGTGCCC GGTGTCTCCG AGGTTGCCTC GGTGGGGGGC
TTTGTGCGCG AATATCAGGT GCGTATTGAC CCCAACCGAC TCCGCGCCTT TGATGTGCCC
CTCAGCCGGG TGCAACAGGC GGTCAAAGCC GCCAGCTTAG AGGTGGGGGG GCGGGTTTTA
GAACGGGCCG AAACCGAGTT GATGATTCGC TCGAAGGGTT ATGTCACCTC ACTGCACGAT
CTGCAACAGG TGGTGGTCTA CGCCAAAAAT GGCCGTCCGG TACTGCTCAC CGATGTCGCC
CGCGTGGTGG AGGGTCCTGA ACTACGCCGA GGGGTTGTGG AACTCAATGG TGAGGGCGAG
GTGGTGGGGG GCATTGTGGT GATGCGCTCT GGGGAAAATG CGCTTACTGT CATTGAAGCC
GTGCAAGCCA AGCTGGCCCA ACTGCGCCCC GGATTACCCG CTGGGGTGGA GATACGCACC
GTCTACGACC GCGCCCCGTT GATTCGGGAT GCGGTGGATT ATCTTAAACA TAAATTGCTC
GAAGAGGGCT TGGTGGTCGC CCTGGTCTGT CTGGTTTTTT TGCTGCACGT GCGTTCGGCC
TTGGTGGCCA TCATCACCCT ACCCTTGGGT ATTTTAGGGG CCTTTATCCT GATGTCCAGC
CAGGGCATCA CCGCCAATAT TATGTCCTTG GGCGGCATTG CCATTGCCAT TGGCGCCATG
GTGGACGCCT CCATTGTCAT GGTCGAAAAT GCCCACCGCA AATTGAGCGA CTTGCCACAA
CCTCGCTCGG CGGCTGCCCG CAGGCAGGCG CTTATTGTCG CGGCTCAAGA GGTTGGACCA
GGGCTCTTTT TCAGCCTATT GATTATTACC GTTTCGTTTT TGCCGGTGTT TGCCCTCACC
GGTGAAAGCC ATCGCCTGTT TGCCCCCCTG GCCTATACCA AAACCTACGC CATGGCATTT
GCTTCTATTC TATCGGTTAC AATCGTGCCC ATTCTTATGG TGTGGCTGAT CCGAGGGCGC
ATTTTCAAAG AGCTAAGCAA CCCCCTTAAC CGACTCTTTG TCGGGCTTTA CCGGCCTATT
TTACGCCTCG CGTTGCATCT GCGCTGGTTT ACCCTGCTGC TGGCCGTGGT GGGGTTAATG
AGCCTACAGA TCCCGCTCAA GAATTTGGGT TCCGAGTTTA TGCCCGCCCT TTACGAAGGA
GAGCTGCTCT ACATGCCCAC CACCCTACCG GGGGTCTCCA TTGGCAAAGC CAAAGAGATT
TTGGCCCAGA CCAACCGCCT GATCATGACG GTGCCAGAGG TTGAACGGGT GTTTGGCAAG
CTGGGACGCG CCGATACCGC CACCGATCCC GCGCCCATCT CCATGATTGA GAGCTGGATC
AAACTTAAAC CCAAGGCCCA GTGGCGCACT GGTCTGGATG TGGAGGGGCT CATCAAAGAG
CTTGACCAAC GGGTTAAACT GCCCGGATTG GTCAACAGTT GGGGGTATCC CATCAAAATT
CGTATGGATA TGATCTCCAC CGGCATCCGT ACACCGGTGG GCATTAAAAT TTCTGGTCAA
GATTTGCAAG AGATTGGCCG CATCGCCCTG GATGTGGAGG CCGCCGTCAA GGATGTACGC
GGTACCCGCA GTGCCTTTGC CGACCGGGTG AGCGGCGGGC GCTATCTGGA GATTGACCCC
AATCGGGAAG AGTTGGCGCG ACGCAATATT GATCTTGCTC TGTTTCAATC CATTATTCAG
ACCGCGCTGG GGGGCATGAA GATCGCCGAG AGCATCCAGG GACGGGAGCG CTATAATATT
CAGATGCGCT ATGACCGCCC CTTCCGCGAG TCGGAGCAGG ATTTGGCCGA GATTTTGGTC
CCTACCCCCA TGGGACAGCA CATTCCCCTG GGTGAGTTGG CCACCATTAC CTATGCCGAA
GGGCCCCCCA TGATTAAATC CGAGGATGCT CGCCTTACCG GCTGGGTCTT TGTGGATATG
AGCGGGCGGG ATATGGGCGG CTATGTGACC GAAGCCCAAG CGCACATCGC CAAGGTCGTT
CCGCTTCCCC CCGGTTACGC CATCACTTGG TCGGGCCAGT ATGAGCAGAT GATGGAAGCC
CGCCAACGCC TAAATATCGC CATCCCCGCC GCCGCCGCCA TTATTCTGCT GCTGTTGATG
ATCCACTTTG GCCGCCTAGA CCGCACCATG ATGGTCATGA CCGCGCTGCC CTTTGGCTTG
GTGGGGGGAT TATGGGCGGT CTATCTGGCC GACTATCATC TGTCGGTGGC GGTGGCGGTG
GGCTTTATTG CACTGGGGGG AATCGCCGTG GAAACGGCGG TGGTTATGCT GCTCTACATT
GACCAACAGG TGCGCCATGA CCAACCCCAA AATCACCGCG CCCTGTTTGA TGCCGTTATA
ACGGGGGCCG CCATGCGGGT GCGCCCTAAA TTAATGACGG TGGCGGTGAT TATAGCGGGT
CTGCTACCCA TTTTTTATAC CGACGGCTCG GGTTCAGACG TGATGCGCCG TATTGCCCTG
CCCATGGTGG GGGGTATGCT CAGCACCACC TTGATGACCC TCATCGTGAT CCCCGTCCTC
TATATGCTGT GGGAGGCCCG TCGCCTACCC ATAGAACCCA ACCCCACCCT ACATTCTGGA
GAATGA
|
|---|
| Protein sequence | MADTPHTPPS AGHDPTQSMI ARLIEWSIHH QLIVVILTLG LAVAGVLAVQ RTPLDAIPDL
SDTQVIIRTE FPGQAPQIVE DLVTYPLSTT LLGLPKTQAV RGFSMFGTSF VYVIFQDGVD
MYWARSRVAE ALATVQKDLP DKATPRMGPD ATGVGWIFQY ALVDPTGQHD LAELRALQDW
FLKFELATVP GVSEVASVGG FVREYQVRID PNRLRAFDVP LSRVQQAVKA ASLEVGGRVL
ERAETELMIR SKGYVTSLHD LQQVVVYAKN GRPVLLTDVA RVVEGPELRR GVVELNGEGE
VVGGIVVMRS GENALTVIEA VQAKLAQLRP GLPAGVEIRT VYDRAPLIRD AVDYLKHKLL
EEGLVVALVC LVFLLHVRSA LVAIITLPLG ILGAFILMSS QGITANIMSL GGIAIAIGAM
VDASIVMVEN AHRKLSDLPQ PRSAAARRQA LIVAAQEVGP GLFFSLLIIT VSFLPVFALT
GESHRLFAPL AYTKTYAMAF ASILSVTIVP ILMVWLIRGR IFKELSNPLN RLFVGLYRPI
LRLALHLRWF TLLLAVVGLM SLQIPLKNLG SEFMPALYEG ELLYMPTTLP GVSIGKAKEI
LAQTNRLIMT VPEVERVFGK LGRADTATDP APISMIESWI KLKPKAQWRT GLDVEGLIKE
LDQRVKLPGL VNSWGYPIKI RMDMISTGIR TPVGIKISGQ DLQEIGRIAL DVEAAVKDVR
GTRSAFADRV SGGRYLEIDP NREELARRNI DLALFQSIIQ TALGGMKIAE SIQGRERYNI
QMRYDRPFRE SEQDLAEILV PTPMGQHIPL GELATITYAE GPPMIKSEDA RLTGWVFVDM
SGRDMGGYVT EAQAHIAKVV PLPPGYAITW SGQYEQMMEA RQRLNIAIPA AAAIILLLLM
IHFGRLDRTM MVMTALPFGL VGGLWAVYLA DYHLSVAVAV GFIALGGIAV ETAVVMLLYI
DQQVRHDQPQ NHRALFDAVI TGAAMRVRPK LMTVAVIIAG LLPIFYTDGS GSDVMRRIAL
PMVGGMLSTT LMTLIVIPVL YMLWEARRLP IEPNPTLHSG E
|
|---|
| |