| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3229 |
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| Symbol | |
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| ID | 4481894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 4019450 |
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| End bp | 4023037 |
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| Gene Length | 3588 bp |
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| Protein Length | 1195 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639723978 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_867125 |
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| Protein GI | 117926508 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.909958 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.738512 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGCAT CCTTTGTTCA TCTGCATCTG CATACCGGTT ATTCGCTGCT CACCTCGACG
GTGCGGCTCA AGCAGGCCAT TGAGCGTGCC CAGAGCTTGC AGATGCCGGC CTTGGCGCTG
ACCGATCAGG GTAATCTGTT TGGCGCGATC CAGTTTTATA GTGGCTGTTT AAAGGCGGGT
ATCAAACCGC TGTTGGGGGC GCAGCTCTAT CTGGTACCCG ACCACACCAA TAAAGAAGAG
CGGGTGGATA AAGAGGTGCG GGATCAAGTG ATCCTGCTGT GCCGCAATGA AGAGGGCTGG
AAAAACCTCA TGCGCCTTAT CGCCAAGGGT CACTTGGATG GCAGCCATGG TTTGCCACGC
ATCGACCTGC CCTTGCTAAA ACAACATAGC GCCGGGCTGC TGGCGCTCTC TGCGGGGGCA
AAGGGGGCAG TGGGGCGGCT GCTGGCCCAG GAACGCCCCG CCGAGGCCGA GGCCGCCGCT
GCCGAACTGG CCGCGATTTT TGGTGACGAT GGGCAGATGC CCAATTTTCA CCTAGAGCTA
CAGCGCCACG GTGAACCCGG TGAAGAGAGG CTGATTCAAC AGACCGTCGT CCTGGCCCAA
AAGCTTAATC TACCCATCGT CGCCAGTTGT GATATCCACT ATATGGATCC CGAAGATGCC
AACGCCCGGG ATGCCCTCTA CTGCGTAGGG GCGGTGCGGA CTCTATATGA GGAGAATCGC
CCGCGCCTCT CAGATCGCTA CGCCTTTGCC ACCCCTGCGG AGATGGCCGA GCGCTTTGCG
GATCTGCCCG AAGCCCTGGA AAATACCCGC CGTATCGCCA TGCGCTGTAA CCTCCAGCTC
AAGCTGGGTA CCCCCATGCT GCCCGATTTT GCGCTCCCCC CCGGGCAAAC CTTGGAAGGG
GAGATGCGCA CTCAATCAGA AGCCGGTTTG GAGGAGCGCT TAAGTAAATA TGTGTTGCCC
CGTTTTCCCG CCGCAGAGCA TGCCGAGCTG CGCCAACGTT ATCATGACCG GCTCACCTAT
GAGCTTGGAA TTATTAACCA GATGGGTTTC CCTGGTTATT TTCTCATCGT TTCTGACTTC
ATAAAATGGG GTAAAGATCA CCACATTCCG GTGGGGCCGG GGCGGGGCTC GGGGGCGGGT
TCGCTGGTGG CTTGGTCTCT CTCCATCACC GACTTGGACC CCATTCGTTA TACCCTGCTG
TTCGAGCGCT TTCTCAACCC CGAGCGGGTG AGCATGCCTG ACTTTGACGT GGATTTTTGC
ATGGATCGCC GTGAAGAGGT GATCGGCTAT GTGCAGCAGA AATATGGGGA GGATCGTGTT
GCCCAGATTA TTACCTTTGG CACCATGCAG GCCAAGGCGG TGATCCGGGA TGTGGGGCGG
GTATTGGAGT TCCCCTATGG GCGGGTGGAT AAGATCGCCA AATTGGTGCC CAACGTGTTG
GGCATCACCC TCAAAGAGGC GCTGGAGCAG GAGCCCCGCC TGCGCGACAT GATGGAGGAT
GAGGAGGAGG TGGGCCACCT AATCAATCTG GCGCTGGCCT TGGAGGGCTC TCCCCGCTCC
TGTGGTACCC ATGCGGCGGG GGTGGTGATC TCCAATGGAC CCTTGACCGA TACGGTTCCT
CTCTATCGAG ATCCCCGCTC CAGCATGCCG GTGACGCAAT TTAATATGGG GGATGTGGAG
AAGGCCGGGC TGGTCAAGTT TGACTTTTTG GGCCTCAAGA CCCTCACGGT GATTGATAAT
ACCCTCAAGA TTGTCAACGC CCGCCGTGCG CAGGAGGGTG AACGGGCGGA GGATCGTGTT
CCCATTGATA TTGCCGCCAT TGATATTGAG GATGAGCGGG CCTTTCGGCT GCTTATGGAT
GGGCGCACCA AGGGGGTGTT TCAGTTGGAA TCCTCAGGGA TGCGGGAGAT CCTGAAAAAG
CTGGCACCAG ATACCTTTGA GGATATCATC GCGCTGGTGG CTCTCTACCG GCCCGGACCA
TTGGGTTCGG GCATGGTGGA TGACTTTATT GCCCGTAAAC ATGGGCGGGC GGTGGTGGAG
TATCCACTGC CTCAGTTGGA GCCTATCCTG CGAGAGACCT ATGGGGTGAT CCTCTACCAG
GAACAGGTGA TGAAAATTGC CCAGGTGCTG GCGGGCTATT CGCTGGGGGC GGCGGATCTG
CTGCGCCGGG CGATGGGTAA GAAAAAACCG GAAGAGATGG CCAAGCAGCG CTCCATTTTT
ATGGACGGTG CCAAAGCCCA ACAGATTGAT CCAGAGAAAG CCGGTTATAT TTTTGATTTG
ATGGAGAAGT TTGCGGGATA TGGTTTTAAT AAATCGCACT CGGCGGCCTA TGCGCTCATC
TCATACCAGA CGGCGTGGTT AAAGGCACAC TATCCGGTCG CCTTTATGGC GGCCACCCTC
AGCGCCGACA TCAACAACAC TGACAAAGTG GTCAACTTTG TGCGGGAGTG TCACGACATG
TCGGTGCAGG TATTGCCGCC AGACGTCAAC CGCTCGGCGG TGATTTTTTC GGTACAGCCT
GGGGCGGGGG ATGAGGATGC GGTGCGCTTT GGCTTGGCGG CCATCAAAAA TGTGGGTGAA
GCACCCATGG CCGCCTTGGT CAAAGCCCGG GAGGAGGGGG GACCGTTTGC CTCGCTGTTG
GATCTCTGTC AGCGCACCGA GGGGGGCAAC CTGAACCGGC GCACCCTGGA AAACCTGATC
AAGGCGGGGG CCTGTGATGG TTTGGGTAAG GGCAATCGGG CGGCGCTGTT AAGTGCCCTG
CCCGAGGCAT TAAACCGAGG AACCCAGCAC CAGAAGGATC AAAAGCTGGG GTTTATGAAT
CTGTTTGGGG ACGAAGAGGC GGAAAACAGC GAAAGCACCG CCAATTGGAA ACTGCCCGAA
GTGCCGGATT GGCCGGAAGA GGAGCGCCTA GAACGTGAAA AAGAGGCGCT GGGTTTTTAT
ATCTCCAGCC ATCCGCTGCG CAAATATGAG GCGGAGATGC ACGATTATGG TCTCATGAGC
CTTTCGGAGC TGCGGGAGAA ATATGGCCCC ACCAGTCAGG AACCCATGGG CAATGATGGG
CGGGTTTCGG TGCGTTTTAC CGGGGTGGTG GTGGAGCGCA AACTGCACCG CACCAAAAAG
GGCGACCGCA TGCTGTTTGT CACCCTGGAG GATATGTTGG GGCAGATGGA GGGGGTGGTG
TTTCCCGATG CTTATGTGGC CAATCGGGAG GTGCTGGAGG AGGAGGGGCC GTTAATCTTT
GAGGGGCAGG CCGAGGTGCG CGATGAAGAG GTCAAGGTGG CCATCCACAG CGCCGTCACG
CTCAACAACT ATCGACGTCA CGCCTGTCGT TTTTTGCGGG TAGAGGTGCC TGCCGGGCTG
CTGCGGGGTG GCGGTTTGGA TGAGTTAATG GCCCTGCTGC AACCCCACAT CGGGGTGGAT
GGCTGCCGTA CCATCCTGGT GGTGCGCATG GCCAAAGCGC GGGTGACGCT GGAACTGACC
CTGCCGGGTC TGGTGGTGCC CAGCGATGGG GTATTGGATA CCCTCATCCA ACGGTTTGGT
AACGGGGCGG CCAGTTTTCG CAAAACCCTT AATCTTCCAG CGGCATAG
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| Protein sequence | MPASFVHLHL HTGYSLLTST VRLKQAIERA QSLQMPALAL TDQGNLFGAI QFYSGCLKAG
IKPLLGAQLY LVPDHTNKEE RVDKEVRDQV ILLCRNEEGW KNLMRLIAKG HLDGSHGLPR
IDLPLLKQHS AGLLALSAGA KGAVGRLLAQ ERPAEAEAAA AELAAIFGDD GQMPNFHLEL
QRHGEPGEER LIQQTVVLAQ KLNLPIVASC DIHYMDPEDA NARDALYCVG AVRTLYEENR
PRLSDRYAFA TPAEMAERFA DLPEALENTR RIAMRCNLQL KLGTPMLPDF ALPPGQTLEG
EMRTQSEAGL EERLSKYVLP RFPAAEHAEL RQRYHDRLTY ELGIINQMGF PGYFLIVSDF
IKWGKDHHIP VGPGRGSGAG SLVAWSLSIT DLDPIRYTLL FERFLNPERV SMPDFDVDFC
MDRREEVIGY VQQKYGEDRV AQIITFGTMQ AKAVIRDVGR VLEFPYGRVD KIAKLVPNVL
GITLKEALEQ EPRLRDMMED EEEVGHLINL ALALEGSPRS CGTHAAGVVI SNGPLTDTVP
LYRDPRSSMP VTQFNMGDVE KAGLVKFDFL GLKTLTVIDN TLKIVNARRA QEGERAEDRV
PIDIAAIDIE DERAFRLLMD GRTKGVFQLE SSGMREILKK LAPDTFEDII ALVALYRPGP
LGSGMVDDFI ARKHGRAVVE YPLPQLEPIL RETYGVILYQ EQVMKIAQVL AGYSLGAADL
LRRAMGKKKP EEMAKQRSIF MDGAKAQQID PEKAGYIFDL MEKFAGYGFN KSHSAAYALI
SYQTAWLKAH YPVAFMAATL SADINNTDKV VNFVRECHDM SVQVLPPDVN RSAVIFSVQP
GAGDEDAVRF GLAAIKNVGE APMAALVKAR EEGGPFASLL DLCQRTEGGN LNRRTLENLI
KAGACDGLGK GNRAALLSAL PEALNRGTQH QKDQKLGFMN LFGDEEAENS ESTANWKLPE
VPDWPEEERL EREKEALGFY ISSHPLRKYE AEMHDYGLMS LSELREKYGP TSQEPMGNDG
RVSVRFTGVV VERKLHRTKK GDRMLFVTLE DMLGQMEGVV FPDAYVANRE VLEEEGPLIF
EGQAEVRDEE VKVAIHSAVT LNNYRRHACR FLRVEVPAGL LRGGGLDELM ALLQPHIGVD
GCRTILVVRM AKARVTLELT LPGLVVPSDG VLDTLIQRFG NGAASFRKTL NLPAA
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