Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_3212 |
Symbol | |
ID | 4481645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 3994710 |
End bp | 3996287 |
Gene Length | 1578 bp |
Protein Length | 525 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639723961 |
Product | protein-export membrane protein SecD |
Protein accession | YP_867108 |
Protein GI | 117926491 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACAGC AGCCGCGCTG GAAACTGTAT CTGGTAGTAT TGGTGGCACT GGGTTCCATC TACTATGCCC TGCCCAGCCT CTTGGGTGGC AACCTGCCCA GTTGGATGCC CAATAAGGTG ATTCATCAAG GGTTGGATCT GCAAGGGGGA CTCTATCTAC TCTACGATGT CAAAGTCGAA GAGGCCATCA AACAGGCGGG CAACAATATG GTGGATAGTG CCCGGAACCT GTTGCGCAAA GAGCGGCAGC GCTATCGGGG CATTGAGCAG GTTGGGGCAG ATCAGGTGGT GATTCGACTC ACCCCCAACT CCGATACAGA GCGCATGCTC AGCGTGCTCA AAGATGAGTT GCGCGAGTCC AAGGTGGAAC ACTTCCAACC CGAAGCACAG ATCCGCCTAA CCCTTGGTGA GGCCGAGAAG GTCGAGATAC GCAAATTTGC CGTGGATCAG GCCATCGAAA TTATTCGTAA CCGGATTGAC GCCTTTGGCG TCTCAGAGCC CAGCATTCAA AAACAGGGGG AGCGGCGCAT CATTGTGCAG CTCCCCGGTA TTAAAAACCC CGATCGGGCC AAGGGGCTGA TCGGTCGCAC CGCACGGCTG GACTTTAAAC TGGTTAACGA AAAGGGTGAT CTTAACCGCG CCCTGGAGGG ACAAGTTCCC GCCGATAGCG AGTTGATGTA TGAAGAGCGT AGCGCCAACC AAGGGGGCAA AAGCGCCTAC CCTCTGCTGG TGTTTAAACG CACCATCCTC TCGGGGCAGC ATATCCAAAA TGCCCAGACC ACCTTTAATG AGTATAACGA ACCCATCGTT TCAGTAAAAT TTGATGCGGT GGGGGGACGT AAATTCTCGC AGATTACCGG TGAACATATC AAAGAGCGGT TGGCCATTGT GTTGGATGGC AAGGTGCAGT CCGCACCGGT GATTCAGGAT AAGATCGCGG GTGGTCGTGC CACCATCTCT GGCTCCTTTA CCCGTGAAGA GGCCCACGAT CTGGCCATCG TGCTGCGGGC GGGCGCCCTA CCGGCCCCGC TGGTGATTTT GGAAGAGCGC ACCGTTGGTC CCACCTTGGG GGCCGATTCA GTGGCGCAGG GTCTAAACTC GGTCTTGATC GGCGGTGTGT TGGTGGTGCT GTTCATGGTG CTCTACTACA AGGGCTTTGG CATGCTGGCC AATCTGGCGG TGGTGCTTAA CGTGACAATC CTGGTCTCGC TGTTGGCGCT TATGCAGGCC ACCTTAACCC TGCCCGGTAT TGCCGGTGCG GTGCTGCTGT TGGGTATGGC GGTGGATGCC AATGTGCTGA TTTTTGAGCG CATTCGTGAA GAGTTGCGCT TGGGTAAATC ACCATTGGCG GCCATTGATC ACGGCTATAG TAAGGCCTTC TCCACCATTT TGGACGCAAA CATCACGACC CTGATTACGG CGGTGATCCT CTATCAGTTT GGCACCGGTC CTGTGCGTGG GTTTGCGGTG ACGCTCTCGG TGGGTCTGTT GGCCTCCATG TTTACGGCGA TCTTCGTTAC CCGGGTGGTG CTGGCCGAGG TGGTGAAAAA CCGTCGTTTG AAAACGCTGA GCATCTAA
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Protein sequence | MRQQPRWKLY LVVLVALGSI YYALPSLLGG NLPSWMPNKV IHQGLDLQGG LYLLYDVKVE EAIKQAGNNM VDSARNLLRK ERQRYRGIEQ VGADQVVIRL TPNSDTERML SVLKDELRES KVEHFQPEAQ IRLTLGEAEK VEIRKFAVDQ AIEIIRNRID AFGVSEPSIQ KQGERRIIVQ LPGIKNPDRA KGLIGRTARL DFKLVNEKGD LNRALEGQVP ADSELMYEER SANQGGKSAY PLLVFKRTIL SGQHIQNAQT TFNEYNEPIV SVKFDAVGGR KFSQITGEHI KERLAIVLDG KVQSAPVIQD KIAGGRATIS GSFTREEAHD LAIVLRAGAL PAPLVILEER TVGPTLGADS VAQGLNSVLI GGVLVVLFMV LYYKGFGMLA NLAVVLNVTI LVSLLALMQA TLTLPGIAGA VLLLGMAVDA NVLIFERIRE ELRLGKSPLA AIDHGYSKAF STILDANITT LITAVILYQF GTGPVRGFAV TLSVGLLASM FTAIFVTRVV LAEVVKNRRL KTLSI
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