| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2968 |
|---|
| Symbol | |
|---|
| ID | 4483486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 3684179 |
|---|
| End bp | 3684853 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639723715 |
|---|
| Product | ribosomal large subunit pseudouridine synthase A |
|---|
| Protein accession | YP_866865 |
|---|
| Protein GI | 117926248 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.577134 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTAC TCGACGCAGG CGATCCAACG CGGCATATCC TACACATGGA TGCCGATCTG
CTTATCTTCA ACAAACCCAA CCGCATGCCC ATCTATCGCG GACCGGGTGG GGGCGAGACC
CTGGCGGACC ATCTGCCCCA GCTCTGTTTT GAGCGCGGCA AGCCTCCCGC CGCCGTGCAT
CGTCTGGATA GCGCCACCAG CGGCTGCTTG GTACTGGGAC GCCACAAGGG CATGCGTCGC
AGCCTCAGCA ACCTGTTTGC CCAGGGTGGT GTTGAAAAGC TCTATTGGGC AGTGGTACAG
GGACGCCCCC TCATGGATCA AGGGCTTATT GAGCTACCCT TACAGGATGT GGGCTGGCCG
GGACGCCCAC GGGTCAAGGT TAGGATGGGG GGCAAATGGG GCCGCACACT GTTCCAGGTC
ATGGGTTATG GGCAAAATGA GACGCTGCTG GCGCTGATGC CCCAAACGGG TCGCACCCAC
CAACTGCGGG TTCATTGTGC CGCCATGGGC TGCCCCATTG TGGGAGACCC CCTCTATGGT
GGCGCGGCCT GCGATGGCCC CCCCATGCAT CTCCATGCTC GGCGCATTCT CTTGCACGGT
GCCATCCAAC AGAGTTTTAC CGCACCGGCG CCGCCCCATC TACAGCGCTT TCTGGAGCAG
ATGCGCCCTT TCTAA
|
|---|
| Protein sequence | MSLLDAGDPT RHILHMDADL LIFNKPNRMP IYRGPGGGET LADHLPQLCF ERGKPPAAVH
RLDSATSGCL VLGRHKGMRR SLSNLFAQGG VEKLYWAVVQ GRPLMDQGLI ELPLQDVGWP
GRPRVKVRMG GKWGRTLFQV MGYGQNETLL ALMPQTGRTH QLRVHCAAMG CPIVGDPLYG
GAACDGPPMH LHARRILLHG AIQQSFTAPA PPHLQRFLEQ MRPF
|
|---|
| |