Gene Mmc1_2943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_2943 
Symbol 
ID4482017 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp3644885 
End bp3646201 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content51% 
IMG OID639723690 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_866840 
Protein GI117926223 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.641955 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACACA TGGCGCCAAC TAAATTTACC GCCAATAAGC TTCACGTTCT TTATGTGGAG 
GATGAGGCAA CCATACGCGA AGAGCTAAGC TCATATCTAA AACGACGCGT AACCCTGTTG
CAGGTTGCCA GCAATGGGGA AGAGGCGTTG GAGATGTTTA AGCGCAGCAA GCCCGATTTG
GTCATTACCG ATATACGCAT GCCCCGCATG GATGGCCTAC AGCTCGCCGA GGCCATTCGC
GCTCTGGATA CTGACATACC CATTATGGTA ACCACCGCCT ATAATGATGA ACGCTTTTTC
CTAAAAGCGA TCTCCATTGG CATTGATGAG TTTATCCTTA AACCCACGCA ACCTGATCTG
CTTAGCCAAG CCATTGCCAA GCTGACCAAA CATATCGAAA TTAAGCGCGA AAGTCAGCGC
CACCAACAGT TTGTCGAGAT GTTGCTGGAG AGCTTGCCAG CCTTTATCTT GGTGGTCAAC
GATAGCGAGA TTGAACACGC CAACAGCCCC TTTTTGCATT TTTTAGGGCT CAGTCATATG
GAGCAGCTGG ACCCTAAAGG TTCTGACATC ATACAGGCCA TCTGTATACA GCCCAACGAT
GCGCTGAGCC ACCTATTGGA ACGTGGCGAT TGGCTTAGTT ACATGACCCA GCGCTGTAAC
ATTCTTCCCA CCATTCAGTT GCAAGAACCC AGCAAGAGCC GAGACCCGAT TACCTGCGCC
ATCTCCTGGA GTTTTGACGC CACGGCGGGA CGCCAGGTGT TTGCCTTTAC GGATCTCTAT
TTAATCCAGC GCAAGATTAA TGATCTTGAG AAAAAAGTCT ACCATGACCC CCTCACCGGG
GCCGCCAATC GCTCTCGACT CTATGAAAAA TTTCATGAAG AGATGAAGCG CAGTGAACGC
TATGGATCAC CCGTCTCTAT TCTGATGTTG GATATTGACC ATTTTAAACG GGTCAATGAC
ACCTATGGTC ACAATGCCGG TGACGAGGTG TTGTTAGAGG TGGTCAAGCG CATGCAAGGC
CATGTACGTG TAACCGATCT GGTAGGGCGA TGGGGGGGGG AGGAGTTTTT ATTAATTGCC
CCTGAAACGG TGCTGGGGGC TGCCCTTGAA GTGGCCGAAA ACATCCGCCG CCTCATTGGT
CAAATTCCCT TTGGTCAAGT GGGTCGGGTC ACCTGTAGTA TCGGGGTGGG GCAACTGGCT
AAGGGCGAGT CCATGAACAC CTGTTTGGAA CGGGTGGATG CCGCACTTTA TCGTGCCAAA
AAGCAGGGCC GTGACCGGGT TGAGATGGCC GACCCACCCC CGACATCCCC TCTTTAA
 
Protein sequence
MTHMAPTKFT ANKLHVLYVE DEATIREELS SYLKRRVTLL QVASNGEEAL EMFKRSKPDL 
VITDIRMPRM DGLQLAEAIR ALDTDIPIMV TTAYNDERFF LKAISIGIDE FILKPTQPDL
LSQAIAKLTK HIEIKRESQR HQQFVEMLLE SLPAFILVVN DSEIEHANSP FLHFLGLSHM
EQLDPKGSDI IQAICIQPND ALSHLLERGD WLSYMTQRCN ILPTIQLQEP SKSRDPITCA
ISWSFDATAG RQVFAFTDLY LIQRKINDLE KKVYHDPLTG AANRSRLYEK FHEEMKRSER
YGSPVSILML DIDHFKRVND TYGHNAGDEV LLEVVKRMQG HVRVTDLVGR WGGEEFLLIA
PETVLGAALE VAENIRRLIG QIPFGQVGRV TCSIGVGQLA KGESMNTCLE RVDAALYRAK
KQGRDRVEMA DPPPTSPL