| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2678 |
|---|
| Symbol | |
|---|
| ID | 4480479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 3381466 |
|---|
| End bp | 3382581 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639723426 |
|---|
| Product | permease YjgP/YjgQ family protein |
|---|
| Protein accession | YP_866580 |
|---|
| Protein GI | 117925963 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0795] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000197081 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.64085 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATCC TGTTCCGTTA TCTACTGCAA CTGTTTTTGC AGGGGTTTGT CAAAGTTTTC
AGCATTTTTA TCGCGCTTTT TTTCCTTATG GATGGCGCGG AGCAAATTCG CCGCTTTGGA
GGGCGCGATC ATGTCATTTG GCAGGATATG GTCGAGCTTA TTTTCCTGCG CATGCCCCAT
TTTTTCACCC AATTTCTACC CCCCATTGCC CTACTTACCA CCCTGTTTGT GGTTACCCGA
TTAACCCGTT TAAATGAGCT GACGGTTATC CGCTCTGGCG GGGTCTCTTT GGTGCGTATT
TTAATCCCCT TTTTATTGGG GGGGGTCATG GTCGCTGGGG TGCAAATGCT GTTGCTGGAT
CAAATTGTAC CCCGCACCAA TGCCGCCGCT GAACGCTCCA TCTTTCGCAT GAACCTACCC
GAGCAGGCGG CTCTTTATGA ATCCATGGTC AGTTTAGAAG GGGTGCGTAA GGATAATTTG
TGGATCCGTG ATGGTGGCCA AATTTTGCAC GCCAAACGGG CTTATGGCGA TAAACGCTTG
CTGCTAGAAG TCACCATTTT CCGCTTTACC CCAGAACATG ACCTGCTCAT GCGCGCCGAT
GCCCACAAAG CAACCTGGGA AAATGAGGGC TGGGTGCTGC ACAATGGTCA GATCTATCGT
TTTAATGGCC ACACCACCCA GAGCGAGCCC TTTACACGCA TGCCTTGGGC GATCAATCTA
GAAAAAGAGC AGATTAAACG CGCGACACCG CAGCCAGAAG AGCTCTCTTT ACAAGCGCTC
TGGAAACATG CCGACCGATT GGCTAGAGAG GGGTATGACG CCACCCCCTA CTGGGTAACC
CTCTACCGTA AACTGGCAGA CCCCCTCACC ACCCTAGCGG CCATCTTGCT GGCGTTCCCC
TTTGCCCTGC GGCTGCACCG CATGGGGGGG ACCTTTCGCT CCATGTTGAT GGGATTTATC
ACCGGCTTTT TTATGTTTGT GGTGGTGGAT CTGTTTACCG CCTTGGGTTT TGGTGAAAGG
CTGCCCCCCT TCTTAGCAGC CTTTGCCCCG GTGATGTTTT TTATCTGTAT CGGTGGTTTT
TTGCTGCTGC ATCTGGAAGA GGATGTGCCC ATCTAA
|
|---|
| Protein sequence | MPILFRYLLQ LFLQGFVKVF SIFIALFFLM DGAEQIRRFG GRDHVIWQDM VELIFLRMPH
FFTQFLPPIA LLTTLFVVTR LTRLNELTVI RSGGVSLVRI LIPFLLGGVM VAGVQMLLLD
QIVPRTNAAA ERSIFRMNLP EQAALYESMV SLEGVRKDNL WIRDGGQILH AKRAYGDKRL
LLEVTIFRFT PEHDLLMRAD AHKATWENEG WVLHNGQIYR FNGHTTQSEP FTRMPWAINL
EKEQIKRATP QPEELSLQAL WKHADRLARE GYDATPYWVT LYRKLADPLT TLAAILLAFP
FALRLHRMGG TFRSMLMGFI TGFFMFVVVD LFTALGFGER LPPFLAAFAP VMFFICIGGF
LLLHLEEDVP I
|
|---|
| |