Gene Mmc1_2419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_2419 
Symbol 
ID4480983 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp3086612 
End bp3088363 
Gene Length1752 bp 
Protein Length583 aa 
Translation table11 
GC content55% 
IMG OID639723167 
Productlipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 
Protein accessionYP_866325 
Protein GI117925708 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02203] lipid A export permease/ATP-binding protein MsbA 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.736336 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTTCAAG ATACCCAACT CATCCGCCGT CTGCTGCGCT TGATCTGGCC GTTCCGTTGG 
TATGTCATTA CCGCACTGCT CTGTATGGGG GTGATGGCGG CTACCAATGG GGCCATCGCC
TTTATGGTCA AACCGCTGGT GGATGACGTC TTTATGCAGA AAGACGCCTC CCTCGTTACC
CTTATTCCCA TTGTGGTTAT GGGTATTTTT ATCGTGCGGG CGGTGGTCTT TTTTCTGCAA
TCCTATCTGA TGCAGAGCTT GGGCTTTAAG ATTGTGCGGC TGTTGCAGGT GCGGCTCTAC
AAAAAGATTC TGCATTTGGA TATGGAGCGT TTTAATACCG AATCCACCGG TAGTTTTATC
TCTCGCATGA TCTTTGATAT TGATCAGCTC AAGCGGGTGG TCTCCACCGC CTTGGCCGAT
ATTACCCGGG AGCTGTTGAC GGTCACTTTT CTGTTTGGGG TGGTGGTCTA TCGCGCCGCA
GAGCTGGCCT GGGTCTCGGT GGTTGGGGTG CCTTTAGCGG TCTATCTGAT CTACCTGTTC
GGGCGAAAAA TGCGCACCAT CAGCCGCCGC CAACAAGAGC TGATGGAGGA TGTCACCAGC
CATCTGGAGG AGACCATCGC CGGGGTTAAG GTGGTCAAAG CCTACTGTAT GGAGGGCTAT
GAACATGGGG TGTTTCGGCG TATTAGCCAG CGGGTATTAA AAAACAACCT GCGCTCAGCC
TTTATCAACG CCATCTCCAA GCCCTCCATT GATCTGGTGG CGGGTATTGC CATCTCGCTG
GTGGTGTTGA CCTCGGCCCA TGCCATTTTG GATGGTAAAA CCACCCCTGG TACGCTCTTT
TCGTTCCTTA CCGCGCTCAT GATGGCTTAC AGTCCATTGA AGCGTATTAC GATGCTCTAT
AATGGGTTAC AAGCGGGATT GGCGGCGGCG CAACGGGTGT TTGAGCGGCT GGATCAATAT
CCTGCCATTC AAAATGTGCC GGAGGCCGGT AAGCTGCAAC CCCTTACCAA AGCGCTGCGT
TTTGAAAATA TTGGCTTTCG TTATCAGAGC AGCGAGGGGC CGGTGCTGCG AGGCATCAAC
CTACACATTG GGGTGGGCGA AAAGGTTGCG CTGGTTGGTC AAAGCGGGTG TGGTAAAAGC
ACCCTGGCCA ATCTGGTGCC GCGCTTTTAT GAGCCGCAGC AGGGGGCGAT TCTGTTTGAT
GGGGTCGATA TTCGCAGTGT GACCATGCGC TCTTTACGCC AGCAGATTGC CATGGTGACC
CAGGAGAATG TGCTGTTTAA CGATACCATC CGCAACAATG TGGCCTATGG CAAGCTCAGA
GCCAGCGATG AGGAGATCTG GGCAGCCCTG GAGGCGGCCA ATGCCAAGAG CTTTGTGGAG
CAGTTACCCG AGGGGCTGGA TGCCATGATC GGCAATAAGG GGGCCAAGCT TTCGGGTGGG
CAGCGGCAAC GCATTGCCAT TGCCCGCGCC CTGCTCAAAT CGGCCTCTGT GTTGATTTTG
GACGAAGCAA CCAGCGCCTT GGATAGCGAG AGTGAACAGT TGGTGCAAGA GGCGCTGGAT
CGTCTGATGG ACCGCTACAC CACGCTGGTG ATTGCCCATC GTCTATCCAC CATTCGCAAT
GCCGACCGCA TTGTGGTGAT GCATGAAGGG GCGGTGGCGG AGATGGGCAC CCATGATAGC
TTGCTGGCGC AGGGGGGCCT CTATGCCAAA CTCTGTGAGA TTCAATTTGA TACCCAAACG
GCGAAAGAGT AA
 
Protein sequence
MVQDTQLIRR LLRLIWPFRW YVITALLCMG VMAATNGAIA FMVKPLVDDV FMQKDASLVT 
LIPIVVMGIF IVRAVVFFLQ SYLMQSLGFK IVRLLQVRLY KKILHLDMER FNTESTGSFI
SRMIFDIDQL KRVVSTALAD ITRELLTVTF LFGVVVYRAA ELAWVSVVGV PLAVYLIYLF
GRKMRTISRR QQELMEDVTS HLEETIAGVK VVKAYCMEGY EHGVFRRISQ RVLKNNLRSA
FINAISKPSI DLVAGIAISL VVLTSAHAIL DGKTTPGTLF SFLTALMMAY SPLKRITMLY
NGLQAGLAAA QRVFERLDQY PAIQNVPEAG KLQPLTKALR FENIGFRYQS SEGPVLRGIN
LHIGVGEKVA LVGQSGCGKS TLANLVPRFY EPQQGAILFD GVDIRSVTMR SLRQQIAMVT
QENVLFNDTI RNNVAYGKLR ASDEEIWAAL EAANAKSFVE QLPEGLDAMI GNKGAKLSGG
QRQRIAIARA LLKSASVLIL DEATSALDSE SEQLVQEALD RLMDRYTTLV IAHRLSTIRN
ADRIVVMHEG AVAEMGTHDS LLAQGGLYAK LCEIQFDTQT AKE