Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_2323 |
Symbol | |
ID | 4482779 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 2957000 |
End bp | 2957872 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639723071 |
Product | RNA polymerase, sigma 32 subunit, RpoH |
Protein accession | YP_866229 |
Protein GI | 117925612 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000107256 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.893759 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGTTA CTATGTTGGT TCCTTATAAA GGAGAAAACC AACTCGCCGG TTATATGCAG CAGGTCGATA GCTACCCGAT GTTGTCAGCG GAGGAAGAGT TTGAGCTGGC GGTGCGTTAC CGAGAGCAGA ATGACCTGGA AGCCGCGCAT AAATTGGTGA CCTCCTATCT GCGTTATGTG GCCAGTATTG CCAAGGAGTA TCAAGGCTAT TACGGCATTA AGTTTATGGA TCTGGTGCAA GAGGGCTCGG TGGGGTTGAT GCAGGCGGTC AAACGCTTTG ACCCCCACAA GGGGTTTCGC CTCGCGACCT ATGCCATGTG GTGGATTAAG GCTTCCATCC AGGAATTTGT ACTGCACCAT TGGTCGCTGG TTAAGATTGG TACCACCGCA GCCCAGCGCA AACTGTTTTT CAACCTGCGT AAATCCAAGG ATACCTTGGA GCGTCTGGAT GCCACTCAGG CAGAGGAGAT GGGGCAGCGT TTTGGGGTAA GCGGCGAGGC GGTGTTGGAG ATGGATGCCC GCTTGAGCGG TCCCGATGAT AGCCTGAACC GTTGTTTGGT GGAGGGCGGT GAAGAGATCC AGAATATGCT GGCTGATAGT GCTCCGAATC AGGAGATGCG GCTGTTGGCG AGCGAGTCTG AACGTCTGCA ACAGCAGATG ATTAAACAGG CGCTGTCATT TTTAAGTGAG CGCGAGCAGA TGATTGTTCG TGCCCGCATT ATGTGTGCTG AGCCCGTCAC GCTGGAGGTG CTGGGTGAGC GTTTAGGGGT CTCCCGTGAG CGTATTCGGC AGTTGGAGAC GCGGGCTTTG AAAAAGCTGC GGGCCTTTTT TGAGGCCGAT GGGGCTTCCT TAGAAGATTT AATGCCTGCC TAG
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Protein sequence | MSVTMLVPYK GENQLAGYMQ QVDSYPMLSA EEEFELAVRY REQNDLEAAH KLVTSYLRYV ASIAKEYQGY YGIKFMDLVQ EGSVGLMQAV KRFDPHKGFR LATYAMWWIK ASIQEFVLHH WSLVKIGTTA AQRKLFFNLR KSKDTLERLD ATQAEEMGQR FGVSGEAVLE MDARLSGPDD SLNRCLVEGG EEIQNMLADS APNQEMRLLA SESERLQQQM IKQALSFLSE REQMIVRARI MCAEPVTLEV LGERLGVSRE RIRQLETRAL KKLRAFFEAD GASLEDLMPA
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