| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2132 |
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| Symbol | |
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| ID | 4483954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 2614333 |
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| End bp | 2615331 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639722876 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_866039 |
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| Protein GI | 117925422 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.864009 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTTGAAC TTGATGAGAC TGCGCCCTTG ACCACCCTGC TTCATGCAGA CGATGCGGGG
CAACGCTTGG ACAAGGCACT CTGCTGCCAC TTTCCCGACC TTACGCGCTC TACCTTGCAG
CGTTGGATTA AAGAGGAACG CGTGATCGTG GATCATGAGG TGGCTAAATT ACCCAGTCAA
AAAGTCCGGG TTGGACAGCA CATCATCATC TATCCCAGCG AGCCAGAGCC ATCTACCGCC
CTGCCCGAAG AGATTGCCTT GGAGATTTTG TTCGAGGATG AACATCTAAT CGTCCTAAAT
AAACCGGCTG GTATGGTGGT ACATCCTGGT GCCGGTGTCA ACCATGGCAC CTTGGTCAAT
GCCCTCTTGT ACCACTGTGG CACGCCAGAC AACCCCCATG GAGGTCTCTC TGGCATTGGC
GGGGTGATCC GCCCAGGCAT TGTGCACCGG CTGGATAAAG AGACCAGCGG TATCATGGTG
GCCGCCAAAC AGGATCATGC CCATATCCAC CTCTCGCGCC AATTTGAACA ACGCACCATT
GGGCGTCGTT ATTTGGCGCT CACCCGGGGC ATACCCCAAC CTGCACAGGG ACGCATCGAG
GGGGCCATCG GACGCCACCC CATCCACCGC ACCAAAATGG CGGTGGTCGA ACAGGGCGGG
CGGGCTGCGG CAACCCGCTA TAAAGTGCTC GAACCCTTAG GCCAATTTGC CCTGATCCGT
TGCCGCTTAG AGAGCGGACG AACCCACCAA ATCCGGGTAC ACATGACCCA TATTGGCCAT
CCCTTAGTGG GAGACCCCCT CTACGGAGCG CAGCATAAAG CGCCCAGCCA CTGGCCCCCG
TTGCATCGTC AGCGTTTTGA CCAGTTTCAG CGCCAAGCCT TGCATGCCCA CACCTTAACC
TTTATTCACC CCCATACTGG TGAAGAGATG TCTTTTAAAC GCCCACCCCC TGCCGATTTT
CGCCAACTCT ATGAAACCCT GGCGGCCATG GCCCAGTAA
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| Protein sequence | MFELDETAPL TTLLHADDAG QRLDKALCCH FPDLTRSTLQ RWIKEERVIV DHEVAKLPSQ
KVRVGQHIII YPSEPEPSTA LPEEIALEIL FEDEHLIVLN KPAGMVVHPG AGVNHGTLVN
ALLYHCGTPD NPHGGLSGIG GVIRPGIVHR LDKETSGIMV AAKQDHAHIH LSRQFEQRTI
GRRYLALTRG IPQPAQGRIE GAIGRHPIHR TKMAVVEQGG RAAATRYKVL EPLGQFALIR
CRLESGRTHQ IRVHMTHIGH PLVGDPLYGA QHKAPSHWPP LHRQRFDQFQ RQALHAHTLT
FIHPHTGEEM SFKRPPPADF RQLYETLAAM AQ
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