| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2112 |
|---|
| Symbol | |
|---|
| ID | 4481341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2584844 |
|---|
| End bp | 2588929 |
|---|
| Gene Length | 4086 bp |
|---|
| Protein Length | 1361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639722856 |
|---|
| Product | Cache sensor hybrid histidine kinase |
|---|
| Protein accession | YP_866019 |
|---|
| Protein GI | 117925402 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTCGT TATCTTTTCA CCTACCCACC CCATTTAGCC TGTTTTCTCG CCTTGGGGTG
GGCGCGAAAT TTACCCTGCT CTTCTACATG GTGGTTTTAC TCTCCCTTGC GGCGGTGGGG
TTTTACGGCT ACAGCCATGC CAGCAAGGCC TATCGAGAAA AAGCCCAAAC CGTGGTTGCT
AACCAAGCCA GTGCGCTCTC TCAATCCATT GCCAATTATC TGAGTGGGGT ACCCAAGGAT
CTCCACTTTG TCTCTAACTA CTACGCCCTT AACCGCTATC TGTACTGGAA CGATCTTGGT
GTGGCTGACA AAACACTGCT CTGGAAAAAC GCCACAATAG ATACTTTTCG CGCCTTATTG
GAGGCCCGCA ACGACTATTT AGCCATCGAT TTTCTAGATA ATCAGGGGGT CGAACAGATC
CATGTCCACA GTACCGAAGC CACCAATGAG CAGGCTTTAG CCACCACCCC ATTAATACCC
AACAGAGAGC AGTCCGACTA TTTTACGGCC ACGCATGCGC TACCCAAAGA TGGGCTTTAT
GTCTCTGCTT TGACTCTAAA TAAAGTTAAC GACAAAATTG AAAAACCGGT GGTGCCCGTC
ATCCGCTTTG CCCAGCCGGT CTACGGCAAA AACGGTGTCA AATATGGCGT AATGGTCATC
CACGTCTTGG CAAACGCCTT TTTGGATTTT ATCCACCATG CCAATATGGA TGCCTATCGT
CGCTACTATC TGGTTTCTCC AGAGGGATAT TATCTCTACC ACCCAGAAGC GGGAAAAAGC
TGGGGCCATT TATTAAATCA CTCGGCAGGT TGCGCCTCTG AACACCCCCA ACTCTTGGCC
AAAATCAAAG ACCTGGAAAG AGGCTCCATA GACTGGTTTG AACACTTGGT CAGTTTCCAG
AGAATTTATC CCGACCCTCA TGATCGCACC AAGTATTGGT TTTTATTGGG TTTTATCGAT
AGCAAAGAGG CGCTCGTCCA ACGCAGTAAC TTTGTTACCA TTTTTTTCAT CATTTTGGCC
CTTACGCTAT TGGCCGTTGT CGGTGCCATT CGTTACTCCA TCGGCTCCAT CATTACCCCC
ATGCTCGCCA TGACAGAGCA GCTCGAACAA CTCGGCCAGG GCAAAGTAAC GGTCACACCG
ATTCATTACC CGCATGCTGA TGAAATGGGG CGCATGATCG ACTCGACTCA ACGCTTGATG
CAGAGCATGC AGGCCCTCAC CGATCAAGCC AATGCCATTG CCTTGGGTAA CTATGCCCAA
CGCGTAAAAA TACTCTCCCA ATATGATGTG TTGGGCAATG CCATCAATAA CATGAGTTTC
GCCCTACAGC TCAATGAACA ACAGCAACGC CAGCGTGAAT GGCATAACGA AAATTTGAAT
CGACTTACCC ACGACCTTTC CGGTGATTTA ACCCCCGAGA CCTTGGCCCA ACAAGCCATC
ACCTTGATTG GGGAGGCTAT TCAGGCAGGT CGCGGTGGCC TTTATATCTA TGACGATCAG
ACGCAACCCC ATAAGCCACT GCTGTTGGTC GGCCGCTATA TGTTTACCCA ACACGATGAA
GGGCAACAGC GGTTTTCCAT GAATGAGGGC ACGGTTGGAC AAGCCGCAGC ACAAAAAAAG
CCCATTTTGT TGGAATGCCT CACGCCTCCT GCGGACCAAT TAAGCAGTGG CGTTGCAAAC
TTTAGTGCCC GCAACAGTTA TACCCTACCC CTGCTCTACG AGGACCGTCT ACAAGGGGTG
TTGGAAGTGG CGACCCTTAA CCCACTTAAC ACACAGCATC GCCAATTTTT AGATGCCGCT
TGCCAAATAA TCGCGGCCAC TCTGTTTACC AGTCTCCAGC GTGAGCGTAT TGCCAACCTA
CTGGTACTTT CGAAGGCTGC GACTCAACGT GCCGAGGCCC AAAGCCACCA GCTCCAACTT
GCCAACGCCC AACTTGAAGA GCAACAGCAG CAGCTACAAC AGCAAACCGA AGAGCTCCAA
CAGAGCAATA CGCAGATGGA GCATCAGCAA CAACTATTGC AACAACAAGC CGAAGAGCTG
CGTATCAATA ACGAAGCGTT GCAACACTCT CAGCATGAGC TCAATCAGCG GGCTATACAG
CTTGAGGAAG CCAGTCAATT TAAATCTGAC TTTTTGGCCA ACATGTCCCA TGAACTGCGC
ACCCCTCTCA ATGCCATTAT TTTAATCTCA AATTTAATGT CACGTGATGA AACCGGCAGG
TTGGATCAAG AGAGTATCGA GCGGACGCGG GTGATCTATA ATGCGGGTAA CGATCTATTG
CGTTTGATCA ACGACATCTT AGACCTCTCC AAAGTGGAAG CTGGCCGCAT GGAGGTGCAC
TTAGAAACCG TGCATAGCCA AGAATTGGTC GAAGAGTTAG AGCCCTTGTT CCGGGATAGC
GCCCAGGAGA AAAAGATTGA GTTGCGCTTT GATGATCAGC TTCAAGGCTG CTTTACCAGT
GACCACCAAA AGGTGGTGCA AATTCTGCGC AATCTGCTCT CTAATGCCAT CAAGTTCACC
GCCCAGGGTT CGGTTATTTT AAGGTTGGCC AAAAGCGATC ATCCACAATA CCCCATTCGC
CTAAGTGTGA CGGATACCGG CATTGGCATT TCTAAAGATA AAATGCCCTA TATCTTTGAG
GCATTCCGTC AAATGGATGG TTCCATCTCG CGTCAGTATG GGGGTACGGG GTTGGGGCTC
GCCATTACCC ATCGCTTTGC CACCCTCTTA AAGGGAGAGG TCGAGTTGCA TAGTGAAGAG
GGCAAAGGCA GCCAATTTAC CCTACTGCTG CCCTTAGCCC ACCCTCATGA GAACACCGAG
CACGGGCAAA CGGAGCCTAA CGCACCGCTC TCTGAGACCA ACGGACCAAC CGCCGAGCCC
ACCTTGATGC CGCCGCTTCC CTCCAGATTT TTGCTCAAGG GGCGGCCTAA GATCCTAGTG
ATTGATGACG ATCTGCTGTT TGTGGAAAAC ATCTCTTACA TCAATCAGGC GCAAGGCTTG
GATACCCTCT CAGCACATGA TGGTCGCGAG GGATTAAGAG TCGCCAAGAG CCATCATCCG
GTGGGCATTA TCCTTGATCT TGGTCTACCC GATATGCGGG GAGAGGAGGT GCTGGAGCAA
CTCAAGCGCT CACCGGAGCT ACGTCATATT CCGGTTTATA TCATTTCGGC CAAGGATAAA
CAGCGTGCCT TGGTGGACCA AGGAGCCATC GGCTTTTTAC AAAAACCGGT CAATGATGCC
CAAATTGCCA CAGCTCAACG GACATTGTTG CAACACGTGT CCGCCAACTA CCACACCCTG
CTCATTTTAG AAGGTCCTGC CCTGCAACAA GACCTCATTG CCGAAAAAGC GATGAACGCT
GGCATGCAAC AACTTGTTGT ACAAAAACCT GAAGAGGTTT TAGCAAAAAC CGCAGGGCAT
CCCTTCGACC TGTTTTTGAC CGACTACGAT ATTGAGGGTA TGACCTGTGT GGAACTCTGC
CAGCAGGTGC GCCAGCATCA GCCAGAGCTG CCGATTATTA TCTACAGCAG CCGTAGTTTG
AACGAGCAGC AGTTGAGTGA GCTGCATGAC GTAACCGAAC ACATCATTCA ACAGGCCCCT
AAGGCCAGTG ACCGTGTGCT ACGTAGCATT GAGCGGTTTC TTACCTCAAC GACCCAAAAG
CGTTCTCGGG CGGGCATCAC CAAGGTTAAC CCTTTTGGCC AAAATCGGTT AGAAGGACAC
ACCATTTTGG CGGTGGATGA TGACCCTCGC AATCTGTTTG TGCTGACAGC CTCGCTGGAG
CAAAATGGCG CGGAGGTGCA TAAAGCTCTC AATGGTCTCA AAGCATTGGA AATACTTAAA
CAGCACTCGG TCGATCTGAT CTTGATGGAT ATTATGATGC CAGAAATGAA TGGTTATGAG
GCGATTCATG AGATTCGCGC CAACCCCAGC TACTGTGAAA TACCGATTAT CGCACTGACA
GCTAAAGCGT TGAAAGAAGA TAAACAGAAA TGCTTAGATG CCGGAGCCAA TGATTATCTT
TCGAAACCCG TCGATTATGA AATCTTGATC AACATGGTGC AAACCTGGAT AAAGAGGACC
GTGTGA
|
|---|
| Protein sequence | MRSLSFHLPT PFSLFSRLGV GAKFTLLFYM VVLLSLAAVG FYGYSHASKA YREKAQTVVA
NQASALSQSI ANYLSGVPKD LHFVSNYYAL NRYLYWNDLG VADKTLLWKN ATIDTFRALL
EARNDYLAID FLDNQGVEQI HVHSTEATNE QALATTPLIP NREQSDYFTA THALPKDGLY
VSALTLNKVN DKIEKPVVPV IRFAQPVYGK NGVKYGVMVI HVLANAFLDF IHHANMDAYR
RYYLVSPEGY YLYHPEAGKS WGHLLNHSAG CASEHPQLLA KIKDLERGSI DWFEHLVSFQ
RIYPDPHDRT KYWFLLGFID SKEALVQRSN FVTIFFIILA LTLLAVVGAI RYSIGSIITP
MLAMTEQLEQ LGQGKVTVTP IHYPHADEMG RMIDSTQRLM QSMQALTDQA NAIALGNYAQ
RVKILSQYDV LGNAINNMSF ALQLNEQQQR QREWHNENLN RLTHDLSGDL TPETLAQQAI
TLIGEAIQAG RGGLYIYDDQ TQPHKPLLLV GRYMFTQHDE GQQRFSMNEG TVGQAAAQKK
PILLECLTPP ADQLSSGVAN FSARNSYTLP LLYEDRLQGV LEVATLNPLN TQHRQFLDAA
CQIIAATLFT SLQRERIANL LVLSKAATQR AEAQSHQLQL ANAQLEEQQQ QLQQQTEELQ
QSNTQMEHQQ QLLQQQAEEL RINNEALQHS QHELNQRAIQ LEEASQFKSD FLANMSHELR
TPLNAIILIS NLMSRDETGR LDQESIERTR VIYNAGNDLL RLINDILDLS KVEAGRMEVH
LETVHSQELV EELEPLFRDS AQEKKIELRF DDQLQGCFTS DHQKVVQILR NLLSNAIKFT
AQGSVILRLA KSDHPQYPIR LSVTDTGIGI SKDKMPYIFE AFRQMDGSIS RQYGGTGLGL
AITHRFATLL KGEVELHSEE GKGSQFTLLL PLAHPHENTE HGQTEPNAPL SETNGPTAEP
TLMPPLPSRF LLKGRPKILV IDDDLLFVEN ISYINQAQGL DTLSAHDGRE GLRVAKSHHP
VGIILDLGLP DMRGEEVLEQ LKRSPELRHI PVYIISAKDK QRALVDQGAI GFLQKPVNDA
QIATAQRTLL QHVSANYHTL LILEGPALQQ DLIAEKAMNA GMQQLVVQKP EEVLAKTAGH
PFDLFLTDYD IEGMTCVELC QQVRQHQPEL PIIIYSSRSL NEQQLSELHD VTEHIIQQAP
KASDRVLRSI ERFLTSTTQK RSRAGITKVN PFGQNRLEGH TILAVDDDPR NLFVLTASLE
QNGAEVHKAL NGLKALEILK QHSVDLILMD IMMPEMNGYE AIHEIRANPS YCEIPIIALT
AKALKEDKQK CLDAGANDYL SKPVDYEILI NMVQTWIKRT V
|
|---|
| |