| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1969 |
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| Symbol | |
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| ID | 4481282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 2446904 |
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| End bp | 2448310 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639722717 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_865881 |
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| Protein GI | 117925264 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.786777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.522263 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAGCG GCCTTGTACG ACATATGAGT GTGGCGTGGC AGGCGTGGCG GCAGGATCGT
CAGGCCCCGG TTAAGGGGTT GGAGCTGGAT CATGAGAACG CCTTTAAACC GGCGGTTTTG
GAGGTTCTAG AGCGCCCTCC ATCCCCCTTT GGGCGGTTGA TTACCTGGAC CATTATGCTC
TTCTGTGCCC TGGCTGTGGG TTGGAGTATC TGGGGGCAGA TTGATGTGGT GGCGGTGGCC
CAGGGTAAGA TTCTACCCAA TGGTCATGTG AAGGTGATTC AGCCCCTGGA GATCGGTGTG
GTGCGGGAGA TTCCCGTGCG CGAAGGGGAG CAGGTCGCCG AGGGGGAGGT GTTGGTGATT
CTGGATCCAA CCTCCACCGA GGCGGATCTG GTGCGTTTTG AGGAGAATCT ACTCTCTGCA
CAATTGGATA TGGCCCGTTG GCAGGCGCTA GCGGAGTGGG ATCAGGGTGA GCAGCCGCAG
ATTCTCTACC GTTCCCCTGA TGGTGCCCCT GAAGGGCGGG TGCAGAAGCA GCGTTGGTTG
CTCAAGGATA CCTTGCTGGC CCACCGTGCT TCGTTGCAGG GCATTGGCCA TGAGCTGAAG
AAGCAGATGG CGGAGCTGGC CTCAGCCAAG GAGGCGGTAC GTAAGTATCA GCAGCTGCTG
CCGTTGATTG CCAAGCGGGC CAATGCTCAG AAGACTCTGA TGGAGAAGAA GCTGGCGGCG
CAATCCCACT GGTTGGAGTT GGAGCAGGAG CGGGTGGAGC TGCAACGGGA TCTGGCCATT
CAGAAGAGCC GTCTGGCGGA GCTGTTGGCG GGGTTGGATG TGACCCGTAA ACGCTTTGCT
GAGACCGAGG CACGCTTTCG CAAAGAGGTG ATGGAGAAGT ATGTCGAATC TGAGCAGCGG
GTTATTGATA TTGAGCAGGA GCTGACCAAG GCGGCCCGGC GCAACCAGTT GCAGGTACTG
CGTTCACCCA TTGATGGGGT GGTGCAGAAT CTGGTGATTC ACACCGTCGG TGGCGTGGTG
CAGCCCGCTC AGGAGCTGAT GCGTATTGTG CCTACATCCG GCGGGATTGA GGTGGAGGCC
TACTTGGCCA ATAAGGATAT CGGCTTTGTG GAGGAGGGGC AGGCGGTGGA GATCAAGCTG
GAGACCTTTC CTTTTACCAG GTATGGGCTG ATCAACGGCA TTGTGAAAAA GCTCTCTGCC
GATGCGGTGG AGCACGAGGA AATGGGTCTG GTCTATGCGG CCCGCATAAG CATGATGAAA
AACACCATGC AGGTGGGGGA GCGGCTGGTT AACATCACCC CTGGCATGTC AGTGACGGCG
GAGATAAAAA CCGGCAAGCG TAGGATCATT GAGTTTTTCC TCAGCCCCAT TCAGAAGTCT
ATGCAAGAGG GGTTGCGGGA GCGGTGA
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| Protein sequence | MFSGLVRHMS VAWQAWRQDR QAPVKGLELD HENAFKPAVL EVLERPPSPF GRLITWTIML
FCALAVGWSI WGQIDVVAVA QGKILPNGHV KVIQPLEIGV VREIPVREGE QVAEGEVLVI
LDPTSTEADL VRFEENLLSA QLDMARWQAL AEWDQGEQPQ ILYRSPDGAP EGRVQKQRWL
LKDTLLAHRA SLQGIGHELK KQMAELASAK EAVRKYQQLL PLIAKRANAQ KTLMEKKLAA
QSHWLELEQE RVELQRDLAI QKSRLAELLA GLDVTRKRFA ETEARFRKEV MEKYVESEQR
VIDIEQELTK AARRNQLQVL RSPIDGVVQN LVIHTVGGVV QPAQELMRIV PTSGGIEVEA
YLANKDIGFV EEGQAVEIKL ETFPFTRYGL INGIVKKLSA DAVEHEEMGL VYAARISMMK
NTMQVGERLV NITPGMSVTA EIKTGKRRII EFFLSPIQKS MQEGLRER
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