| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1898 |
|---|
| Symbol | |
|---|
| ID | 4483597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2361234 |
|---|
| End bp | 2361971 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639722643 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_865812 |
|---|
| Protein GI | 117925195 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00458999 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.479409 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACGC TAAAACCCAC GGTATTGATT GTCGAGGATG ATCCTGACCT TTTAGAAGAT
CTCATGGATT TTTTAGATGC GCGTGGCTTT TCGGTCCGAG GTGCGAAAAG TGCTCAGGAG
ATGCATCGCG CCCTCGCAGA AAACCAACCT GATCTGATTG TCATGGACAT CCTATTGCCC
GATGATAATG GCATTGCCCT GACCCGTGAG CTCCGTCAGG AAGGAAATAT GGGGATCTTA
ATGCTCACCT GCATGAACGA TACCCAGCAT ATGTTGGACT CACTACAATC GGGGGCCGAT
GCCTACCTAT TGAAGGATTC CGAACTCTCT GTGGTTGAGG CCAATCTGCG CAGCATTATG
CGACGTTTAC CCAAGTGGTC CACCAGCACC CCCTTACCCG AGGATGACCC CACCACCCTC
TCTCCCACAG ATGGCACGGC GTGGCACTAC GATACCATTA CTTGGACTTT AACCGCCCCA
ACCCATTTGT CGGTTAAACT GAATGGTCGT GAGCATCGTT TTTTACTAAC ACTTTGCCAA
ACACCTGGAA AAACGGTTGA AAGACCAATC TGCCTAGACG CCTTAGGTAA AAAAGATACC
GTAACCAATC GCCGTAGTAT GGATGTGTTT GTACGCCGTC TTAAAAATAA GATCGAACCA
ACGGTTAACC TGTCGTTCCC ATTGGACACG GTTTATGGCG TAGGTTACGC ATTTACCGCC
CCTATCGTGG TAGAATAG
|
|---|
| Protein sequence | METLKPTVLI VEDDPDLLED LMDFLDARGF SVRGAKSAQE MHRALAENQP DLIVMDILLP
DDNGIALTRE LRQEGNMGIL MLTCMNDTQH MLDSLQSGAD AYLLKDSELS VVEANLRSIM
RRLPKWSTST PLPEDDPTTL SPTDGTAWHY DTITWTLTAP THLSVKLNGR EHRFLLTLCQ
TPGKTVERPI CLDALGKKDT VTNRRSMDVF VRRLKNKIEP TVNLSFPLDT VYGVGYAFTA
PIVVE
|
|---|
| |