| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1802 |
|---|
| Symbol | |
|---|
| ID | 4483682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2231185 |
|---|
| End bp | 2233653 |
|---|
| Gene Length | 2469 bp |
|---|
| Protein Length | 822 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639722544 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_865716 |
|---|
| Protein GI | 117925099 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[R] General function prediction only |
|---|
| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
[COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.984059 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAGT CAAATAAAGA TTGCTATCCA GCGCTTGAGC AAGCACTACG TTGCATGGCT
GCGGGTGATT TGCGGCGCTT AGCCGTGTTG GTGGAACCGT TATTACAAGC CCCTCCCGAG
GATGCCTATT TTCTGGGCCA TTTGGCGGTT ATCTTGCGGC GCTTAAAAAA AACAGAGCCT
GCACTGGCGC TGTTGCGAAA AGTGACCCAA CAATGGCCCG AATCCTATAT CTGGCACTTT
AATCTTGGCA ATGCGGCTAA GGAGGCTGGC CGCTTGGATG AAGCTGAAAT GGCCTATCGT
GCCGCCTTGC ACCGGCAACC TCAACTTGAA GGTGCTCGGT TTAACCTTGC CCAGTTGTTG
ATGGGTCGGC AATGCCACCG TGATGCTTTG CAGATGCTGG AGCCCTTAAC CCACCACAGC
GAGCAGCCCG CCGCCGTTTG GGCGGCAGTG GCGGGCTGTT ATGAGGGCTT ACAGGAGTGG
CTGTTAGGGT TAGAAGCTGC GGAGCGAGCC TTGAGCATGG CTTCCAATCG GGTACGCTAT
CAACACCTTA AAGTGTCGTT ATTGATGCGA CTTGCACGGC ATCAAGAAGC TTGGCCCTTG
CTGCTACAAG GGCTTGCCTA CGATGCCTTA TCGACCAGCC AGTGGATTAC ACTCTTTCGT
TCACTGCGTA AACCCGGCCT CAAGGCGCAG CTTTTTGAGT GGATGGTGCA ACACCCGCCA
CGGGGTCAAG ATCCTTGGCT GGTTTATGTC AACGCCCTGC AACTGGATGG GGCGTATCAG
GCTGCGCTGG ATCTCTGTGT GCAGGCCGAG CAGGCTCAGC AAATTTCCCC GCAACTGTGG
GATGCCCGGG GTGTGGCTTG GCAGGCTGTG GGGGCTTGGC AAGAGGCGAT GCGTGCCTTT
GAGATCAGTC TGGAGCAGGA TGCTTCACGG GCTGCGGTAC ACTCTAATTT TGGTATGCTG
TGCCATATTT TGGGTAAAGA TGTTGAGGCG GAGCAAGCCT TTCGTCACGC CATTGGCTTG
CAGCCTGATT TGGCTATGGC CTATGCCAAT CTCGGCTTGG CGCTAACGCG TCAATACCGG
CTGGCAGAGG CTGCTGTGGC TTGTCGGCAG GCACTGCAAC TTAACCCAAA ACTTAGCCAA
GGTTTTTTTA ATCTTGGTCC CGTGCTGATC AAGCAAGGCC GCGCCGCAGA AGGTACCGAT
GCCATGGCCC AGGGCTTGAC GCTTAACCCC TCGGCCTATA GCTCCTTTTC CAGCTATCTG
TTTGGATTAA ACTATCTGGA CATAGATCCA TATACACTAT TTAACCATCA CCAGCGCTTT
GGCGCTCAGC TTCGCAAACA GTACGTACCA CGACGGCATT GGCCTAACCA AAAAAATCCT
GAACGGGCGA TCCGTGTGGG ATGGGTGTCG GCAGATCTAC AGCACCATCC TATGGGGTTG
ATGCTGTTGC CTTTGCTTAA ACAACTCAAA GGGGTGCGTA TGGAGCATTT TCTCTACGAT
GGCACCCTAA AACACGATGC TATTTCTCAA GAGATCGTGG CGTTAGCCGA TCACACGGTA
GCGATCCGTC ACCTTAGCCA TGAGGCTTTG GCCGAACGTA TTCAGGCAGA TCGTGTGGAT
CTGTTGTTGG ATCTTGGTGG ACACACGGCA GATAACCGGT TGCCCATGTT TGCCCTTAAA
CCCGCGCCTG TACAGTTAAG CTGGGCCGGT TATGTCAATA GCAGTGGTCT GGGCTGCATG
GATGGGGTGA TCTTGGATTG TTACACCGCA CCAGCAGGAT TGGAGCGTTT TTATAGCGAA
CCCATTTTGC GCCTGCCACA TGCCCTCTAT TGTTATGAGC CCTGCCAGCC ACACCCGCCG
GTTGCCTCTT TACCCGCGCG TAAAAATGGC TATATAACGT ATGGCTGTTT TAATAATTTG
GCCAAACTTT CCCCCCGCAC CCTAAGATTG TGGGGGGAAA TTTTAAAACG GCTGCCCAAC
AGTCGGTTGG CGCTCAAATC AGCCTCTGTT TGTGATGCAG AGACCCGCGA GGCTTTGGTT
AAACAGCTGG CGGCCCTAGG GGTTAGCGCC CAGCGGCTTA TTTTTATCCA ACCTTCGGAC
TATGGGCGCT ATCTGGAAGA TTATCAATTT GTGGATATTG CACTGGATCC TTTGCCGTTT
AATGGGGGCA TTACAACCTT GCAAGGTTTA TGGCAAGGGG TGCCCATCGT AACCCGTTGG
GGGCTGGGGC AGCGCGATCG GGTCGGCGGC AGTATCCTGA CTGACCTGGA TTTGGTGTCA
TGGATCGCCG ACAGTGACCA AGCCTATATT GAGTGCGCCG TCGCCAAAGC GGCTGATCTG
GATGCCCTGG AAAGGTTGCG TATGGCACTA CCGTCGCGCT TAAAGAGCAG CCATGTGGGC
AGCGCTTTGC GTTTTGCGCC GGCTTTTTCA GAGCTGTTGC GCCAGGCTTG GCGTCGATGG
TGCGCTTGA
|
|---|
| Protein sequence | MAESNKDCYP ALEQALRCMA AGDLRRLAVL VEPLLQAPPE DAYFLGHLAV ILRRLKKTEP
ALALLRKVTQ QWPESYIWHF NLGNAAKEAG RLDEAEMAYR AALHRQPQLE GARFNLAQLL
MGRQCHRDAL QMLEPLTHHS EQPAAVWAAV AGCYEGLQEW LLGLEAAERA LSMASNRVRY
QHLKVSLLMR LARHQEAWPL LLQGLAYDAL STSQWITLFR SLRKPGLKAQ LFEWMVQHPP
RGQDPWLVYV NALQLDGAYQ AALDLCVQAE QAQQISPQLW DARGVAWQAV GAWQEAMRAF
EISLEQDASR AAVHSNFGML CHILGKDVEA EQAFRHAIGL QPDLAMAYAN LGLALTRQYR
LAEAAVACRQ ALQLNPKLSQ GFFNLGPVLI KQGRAAEGTD AMAQGLTLNP SAYSSFSSYL
FGLNYLDIDP YTLFNHHQRF GAQLRKQYVP RRHWPNQKNP ERAIRVGWVS ADLQHHPMGL
MLLPLLKQLK GVRMEHFLYD GTLKHDAISQ EIVALADHTV AIRHLSHEAL AERIQADRVD
LLLDLGGHTA DNRLPMFALK PAPVQLSWAG YVNSSGLGCM DGVILDCYTA PAGLERFYSE
PILRLPHALY CYEPCQPHPP VASLPARKNG YITYGCFNNL AKLSPRTLRL WGEILKRLPN
SRLALKSASV CDAETREALV KQLAALGVSA QRLIFIQPSD YGRYLEDYQF VDIALDPLPF
NGGITTLQGL WQGVPIVTRW GLGQRDRVGG SILTDLDLVS WIADSDQAYI ECAVAKAADL
DALERLRMAL PSRLKSSHVG SALRFAPAFS ELLRQAWRRW CA
|
|---|
| |