Gene Mmc1_1776 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_1776 
Symbol 
ID4482602 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp2194201 
End bp2197155 
Gene Length2955 bp 
Protein Length984 aa 
Translation table11 
GC content56% 
IMG OID639722518 
Productribonuclease E 
Protein accessionYP_865690 
Protein GI117925073 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000943072 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00020345 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACCAAGC GTATGCTGGT AGACGCCACC CATCCGGAAG AGGTGCGTGT CGCCATTGTC 
CAAGATCAAC GTCTGATTGA TCTGGATATC GAAACCTGCA CCAAGGCACA GATCAAAGGT
AATATCTACC TTGGCCGGGT AACCCGGGTT GAACCTTCTT TACAAGCCGC CTTTGTCGAT
TTTAATGATG GCCGACAGGG TTTTCTCTCT GTCAACGACA TCAACCCCAA ATATTATCCA
CCCGAATTCC GCCCTGAGCC CGATCCCATA GAGGATATGG ATGAGCAGGA AGAGCCTGAA
GATCTCAGCG ATGAGATGGA TGGCGAAGAG GGGGATGACA GCGATGATGA ACCCGGCAAC
GAGGATGGTG CCGATGATGA CGCCAGCCAA GGGGATGCTA GTAGCGAAGC AGAAGCCAAG
CCCCGCGAAC CCAGCCAAAG CGAGCGCCCA GCCCGACGCC CCCGCAATAA TGAGCGCGCC
AACCGGGGTA ACCGCCGTCG GCATATTCCC ATCCAGGATA TTCTAAAAAA GGGCCAACTT
CTTCTATTAC AGGTTGTTAA AGAGGCCCGT GGTACCAAGG GCGCTTCCCT AACCACCAAT
ATTTCCTTGG CCGGACGCTA CACCGTTTTA TTGCCGGAAA ACTCGGGTGG TGGCGGGATC
TCCCGTAAAA TCATGGATAA TCAAGCCCGT AAGGCGCTTA AAACCATGCT CACTGAGATG
GAGATTCCCC AAGAGGTTAG TTTGATCATC CGCACCGCTG GCATGGAGCG CACCAAGCGT
GAAATTGCTC GCGACATGAG CTACCTAACC CGCTTGTGGA AAACCATTCA AGAAAAGGTT
GAGCAGCACA ACACCCCCAC CTTGATCCAT GAAGAGGGGG ATTTAATTAT TCGCACCATC
CGCGACCTCT ACTCCACCGA CATGGAAGAG ATTTTGATTG ATGGGGGCGA AGCCTACCGT
CGCGGTAAAG ATTTTATGCG TCTGCTCATG CCCCGCTATG TCAAGGCGGT GCAACCCTAT
AAAGATCGCA TCCCGCTCTT CTCCCGCTAT CAGGTTGAAC ACCAGATCGA ATCCATGCAT
GAGCGTACCA TCTCGCTCAA AGCGGGGGGT TATCTGGTGA TTGAACCCAC CGAAGCGCTT
GTCTCCATTG ATATTAACTC CGGTCGCTCC ACCAAAGAAA AAAATGTGGA GAACACCGCC
TTTAAGACCA ACATGCAAGC GGTGGATGAG ATCGCCCGCC AGCTGCGTCT GCGGGATTTG
GGCGGTTTGA TCGTGATCGA CTTTATCGAT ATGGAGGAGA AAAAGCACAA TCTTGAGGTT
GAAAAACGCC TCAAAGAGGC GCTTAAAGGG GACCGGGCCA AGATTCAGTT GGGAAAAATC
TCTCAATTTG GTCTGCTGGA ACTCTCACGC CAACGCATGA AACCAGCCTT TAACGAGAGT
AACCGTGAGG TCTGCCCCCG CTGTACCGGG CTGGGCACCA TCCGTTCGGT GGAGTCCACC
GCCATCCGCC TATTCCGTTG CATTGAGGAG GATATTAGCT CGGGCCGTTT CTCCAAATTG
ATCTACTTTG CCCCTGCGGA TGTTGCCAAC TATTTGCACA ATCGCAAGCG TTTTCAAATG
GTGCAGTTGG AGCAAGAGAA CAATCTAGAA TTGCTGATTG AGATTGATCC AGAGCTGCAA
ACACCTCATT TCCGCAAAGA GCGTATTGCC CGCCCTGTGC AAGATGAGCC GGTCGTAAAA
GAGCGTCCTG AGCCTGAAGA GCCCACTCTC GTGAGCGAAG AGGATGAGCC CCAAGAGCTT
ATGGATGACG CCGCTGAAGG GGGAGAAGAG AACCGCACCG ACCCCAAAAA GCGCAAACGC
CGGCGTAAAC GTCGTCGCGG CGGCCGTGAG CGGGAAGAAG GCGCAATGGG GGAAGAAACC
ACCTCTCTGA ATGAGGAGGA GATGCCATCC ACCGAGGCAC CTGCGATGGA TGATGAAGCG
GATGATGAGG GCGATGGCGA TGAGCAAGCC AACCCATCAG AGAGCGCTGA AACCACGCCT
GACTCACCCA GCAAGCGCCG CCGTCGTCGC CGCCGCCGTC GTCGTAGCAC CAGCCAGGAG
GAGAGCGCTC CACGCCTAGA CAGCGGCGAT GAGGAACAAG CGATCCATGG GGATGAGCCA
TCGCCCAGCC CTGAGGATCA ACCGCAACAG CGTGATGAAC ACCCTGTCAC CCTCAGCGAT
GTGCTTCATA GCCTGCCTAC ATCGGTCACC CCGCTGCTGA TGGAAGAGCC TGATACGCCG
CAGCCGGTAC TGCTGATCGA CCCACCGACC ATGCCAATCA AGCATGAGGT GGAGATAGAG
ACGCCCCAGC CAAGTGTGCT GCTGCCCGAA GATCCCCAGC CCGCCATTGT GGAGCGCACA
CAGAGCACCT TGCCTGGACT GGAAGTGGAG CCCCCTCTAC AAGAGCAAGT GGCGGTGAAA
AAACCAGTAC GCAGACGCCG TAAACCTGCG GTCAAAAAGC CCAGTGCAGA AACCGCTGAA
AGTGTCGTCT CTGCCCAAGA GGTGGAGAAC CATGCCACGG CAAGCGTGAC CCCGGCGGCA
GCTGAAAATG TACAGGATAA AGCCTCCATC GCGGCTGATC CCGACGCGGG TGTAACAACT
GACGTTGCTG CGGGAGATCA CCCAACACCA AGCGAGGGCG CGGAACCACC CAAGCAGCGA
CGCCGGAGCA GCACACCCCG TAAGCGTGCG ACACCAAAAG CTGACACCGC AGCGGAGACA
GCCGCACCGA CCACTACGCC TGAGGCGCCG GTTGTTGAAA CGCCCGCAGA GACGCCCGCA
GCCACCACCG AGGCTAAACC AAAGGCGGTT CGAGCTCCCC GTAAGCGTAC CGCAACCCCA
CGTAAGCGTG CGACAGCGGC CAAACCAGCG GCTGAAGAGA GCCACCAAGG GGAAGCCGTT
CCTGACGAGG TGTAA
 
Protein sequence
MTKRMLVDAT HPEEVRVAIV QDQRLIDLDI ETCTKAQIKG NIYLGRVTRV EPSLQAAFVD 
FNDGRQGFLS VNDINPKYYP PEFRPEPDPI EDMDEQEEPE DLSDEMDGEE GDDSDDEPGN
EDGADDDASQ GDASSEAEAK PREPSQSERP ARRPRNNERA NRGNRRRHIP IQDILKKGQL
LLLQVVKEAR GTKGASLTTN ISLAGRYTVL LPENSGGGGI SRKIMDNQAR KALKTMLTEM
EIPQEVSLII RTAGMERTKR EIARDMSYLT RLWKTIQEKV EQHNTPTLIH EEGDLIIRTI
RDLYSTDMEE ILIDGGEAYR RGKDFMRLLM PRYVKAVQPY KDRIPLFSRY QVEHQIESMH
ERTISLKAGG YLVIEPTEAL VSIDINSGRS TKEKNVENTA FKTNMQAVDE IARQLRLRDL
GGLIVIDFID MEEKKHNLEV EKRLKEALKG DRAKIQLGKI SQFGLLELSR QRMKPAFNES
NREVCPRCTG LGTIRSVEST AIRLFRCIEE DISSGRFSKL IYFAPADVAN YLHNRKRFQM
VQLEQENNLE LLIEIDPELQ TPHFRKERIA RPVQDEPVVK ERPEPEEPTL VSEEDEPQEL
MDDAAEGGEE NRTDPKKRKR RRKRRRGGRE REEGAMGEET TSLNEEEMPS TEAPAMDDEA
DDEGDGDEQA NPSESAETTP DSPSKRRRRR RRRRRSTSQE ESAPRLDSGD EEQAIHGDEP
SPSPEDQPQQ RDEHPVTLSD VLHSLPTSVT PLLMEEPDTP QPVLLIDPPT MPIKHEVEIE
TPQPSVLLPE DPQPAIVERT QSTLPGLEVE PPLQEQVAVK KPVRRRRKPA VKKPSAETAE
SVVSAQEVEN HATASVTPAA AENVQDKASI AADPDAGVTT DVAAGDHPTP SEGAEPPKQR
RRSSTPRKRA TPKADTAAET AAPTTTPEAP VVETPAETPA ATTEAKPKAV RAPRKRTATP
RKRATAAKPA AEESHQGEAV PDEV