Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_1776 |
Symbol | |
ID | 4482602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 2194201 |
End bp | 2197155 |
Gene Length | 2955 bp |
Protein Length | 984 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639722518 |
Product | ribonuclease E |
Protein accession | YP_865690 |
Protein GI | 117925073 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000943072 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00020345 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACCAAGC GTATGCTGGT AGACGCCACC CATCCGGAAG AGGTGCGTGT CGCCATTGTC CAAGATCAAC GTCTGATTGA TCTGGATATC GAAACCTGCA CCAAGGCACA GATCAAAGGT AATATCTACC TTGGCCGGGT AACCCGGGTT GAACCTTCTT TACAAGCCGC CTTTGTCGAT TTTAATGATG GCCGACAGGG TTTTCTCTCT GTCAACGACA TCAACCCCAA ATATTATCCA CCCGAATTCC GCCCTGAGCC CGATCCCATA GAGGATATGG ATGAGCAGGA AGAGCCTGAA GATCTCAGCG ATGAGATGGA TGGCGAAGAG GGGGATGACA GCGATGATGA ACCCGGCAAC GAGGATGGTG CCGATGATGA CGCCAGCCAA GGGGATGCTA GTAGCGAAGC AGAAGCCAAG CCCCGCGAAC CCAGCCAAAG CGAGCGCCCA GCCCGACGCC CCCGCAATAA TGAGCGCGCC AACCGGGGTA ACCGCCGTCG GCATATTCCC ATCCAGGATA TTCTAAAAAA GGGCCAACTT CTTCTATTAC AGGTTGTTAA AGAGGCCCGT GGTACCAAGG GCGCTTCCCT AACCACCAAT ATTTCCTTGG CCGGACGCTA CACCGTTTTA TTGCCGGAAA ACTCGGGTGG TGGCGGGATC TCCCGTAAAA TCATGGATAA TCAAGCCCGT AAGGCGCTTA AAACCATGCT CACTGAGATG GAGATTCCCC AAGAGGTTAG TTTGATCATC CGCACCGCTG GCATGGAGCG CACCAAGCGT GAAATTGCTC GCGACATGAG CTACCTAACC CGCTTGTGGA AAACCATTCA AGAAAAGGTT GAGCAGCACA ACACCCCCAC CTTGATCCAT GAAGAGGGGG ATTTAATTAT TCGCACCATC CGCGACCTCT ACTCCACCGA CATGGAAGAG ATTTTGATTG ATGGGGGCGA AGCCTACCGT CGCGGTAAAG ATTTTATGCG TCTGCTCATG CCCCGCTATG TCAAGGCGGT GCAACCCTAT AAAGATCGCA TCCCGCTCTT CTCCCGCTAT CAGGTTGAAC ACCAGATCGA ATCCATGCAT GAGCGTACCA TCTCGCTCAA AGCGGGGGGT TATCTGGTGA TTGAACCCAC CGAAGCGCTT GTCTCCATTG ATATTAACTC CGGTCGCTCC ACCAAAGAAA AAAATGTGGA GAACACCGCC TTTAAGACCA ACATGCAAGC GGTGGATGAG ATCGCCCGCC AGCTGCGTCT GCGGGATTTG GGCGGTTTGA TCGTGATCGA CTTTATCGAT ATGGAGGAGA AAAAGCACAA TCTTGAGGTT GAAAAACGCC TCAAAGAGGC GCTTAAAGGG GACCGGGCCA AGATTCAGTT GGGAAAAATC TCTCAATTTG GTCTGCTGGA ACTCTCACGC CAACGCATGA AACCAGCCTT TAACGAGAGT AACCGTGAGG TCTGCCCCCG CTGTACCGGG CTGGGCACCA TCCGTTCGGT GGAGTCCACC GCCATCCGCC TATTCCGTTG CATTGAGGAG GATATTAGCT CGGGCCGTTT CTCCAAATTG ATCTACTTTG CCCCTGCGGA TGTTGCCAAC TATTTGCACA ATCGCAAGCG TTTTCAAATG GTGCAGTTGG AGCAAGAGAA CAATCTAGAA TTGCTGATTG AGATTGATCC AGAGCTGCAA ACACCTCATT TCCGCAAAGA GCGTATTGCC CGCCCTGTGC AAGATGAGCC GGTCGTAAAA GAGCGTCCTG AGCCTGAAGA GCCCACTCTC GTGAGCGAAG AGGATGAGCC CCAAGAGCTT ATGGATGACG CCGCTGAAGG GGGAGAAGAG AACCGCACCG ACCCCAAAAA GCGCAAACGC CGGCGTAAAC GTCGTCGCGG CGGCCGTGAG CGGGAAGAAG GCGCAATGGG GGAAGAAACC ACCTCTCTGA ATGAGGAGGA GATGCCATCC ACCGAGGCAC CTGCGATGGA TGATGAAGCG GATGATGAGG GCGATGGCGA TGAGCAAGCC AACCCATCAG AGAGCGCTGA AACCACGCCT GACTCACCCA GCAAGCGCCG CCGTCGTCGC CGCCGCCGTC GTCGTAGCAC CAGCCAGGAG GAGAGCGCTC CACGCCTAGA CAGCGGCGAT GAGGAACAAG CGATCCATGG GGATGAGCCA TCGCCCAGCC CTGAGGATCA ACCGCAACAG CGTGATGAAC ACCCTGTCAC CCTCAGCGAT GTGCTTCATA GCCTGCCTAC ATCGGTCACC CCGCTGCTGA TGGAAGAGCC TGATACGCCG CAGCCGGTAC TGCTGATCGA CCCACCGACC ATGCCAATCA AGCATGAGGT GGAGATAGAG ACGCCCCAGC CAAGTGTGCT GCTGCCCGAA GATCCCCAGC CCGCCATTGT GGAGCGCACA CAGAGCACCT TGCCTGGACT GGAAGTGGAG CCCCCTCTAC AAGAGCAAGT GGCGGTGAAA AAACCAGTAC GCAGACGCCG TAAACCTGCG GTCAAAAAGC CCAGTGCAGA AACCGCTGAA AGTGTCGTCT CTGCCCAAGA GGTGGAGAAC CATGCCACGG CAAGCGTGAC CCCGGCGGCA GCTGAAAATG TACAGGATAA AGCCTCCATC GCGGCTGATC CCGACGCGGG TGTAACAACT GACGTTGCTG CGGGAGATCA CCCAACACCA AGCGAGGGCG CGGAACCACC CAAGCAGCGA CGCCGGAGCA GCACACCCCG TAAGCGTGCG ACACCAAAAG CTGACACCGC AGCGGAGACA GCCGCACCGA CCACTACGCC TGAGGCGCCG GTTGTTGAAA CGCCCGCAGA GACGCCCGCA GCCACCACCG AGGCTAAACC AAAGGCGGTT CGAGCTCCCC GTAAGCGTAC CGCAACCCCA CGTAAGCGTG CGACAGCGGC CAAACCAGCG GCTGAAGAGA GCCACCAAGG GGAAGCCGTT CCTGACGAGG TGTAA
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Protein sequence | MTKRMLVDAT HPEEVRVAIV QDQRLIDLDI ETCTKAQIKG NIYLGRVTRV EPSLQAAFVD FNDGRQGFLS VNDINPKYYP PEFRPEPDPI EDMDEQEEPE DLSDEMDGEE GDDSDDEPGN EDGADDDASQ GDASSEAEAK PREPSQSERP ARRPRNNERA NRGNRRRHIP IQDILKKGQL LLLQVVKEAR GTKGASLTTN ISLAGRYTVL LPENSGGGGI SRKIMDNQAR KALKTMLTEM EIPQEVSLII RTAGMERTKR EIARDMSYLT RLWKTIQEKV EQHNTPTLIH EEGDLIIRTI RDLYSTDMEE ILIDGGEAYR RGKDFMRLLM PRYVKAVQPY KDRIPLFSRY QVEHQIESMH ERTISLKAGG YLVIEPTEAL VSIDINSGRS TKEKNVENTA FKTNMQAVDE IARQLRLRDL GGLIVIDFID MEEKKHNLEV EKRLKEALKG DRAKIQLGKI SQFGLLELSR QRMKPAFNES NREVCPRCTG LGTIRSVEST AIRLFRCIEE DISSGRFSKL IYFAPADVAN YLHNRKRFQM VQLEQENNLE LLIEIDPELQ TPHFRKERIA RPVQDEPVVK ERPEPEEPTL VSEEDEPQEL MDDAAEGGEE NRTDPKKRKR RRKRRRGGRE REEGAMGEET TSLNEEEMPS TEAPAMDDEA DDEGDGDEQA NPSESAETTP DSPSKRRRRR RRRRRSTSQE ESAPRLDSGD EEQAIHGDEP SPSPEDQPQQ RDEHPVTLSD VLHSLPTSVT PLLMEEPDTP QPVLLIDPPT MPIKHEVEIE TPQPSVLLPE DPQPAIVERT QSTLPGLEVE PPLQEQVAVK KPVRRRRKPA VKKPSAETAE SVVSAQEVEN HATASVTPAA AENVQDKASI AADPDAGVTT DVAAGDHPTP SEGAEPPKQR RRSSTPRKRA TPKADTAAET AAPTTTPEAP VVETPAETPA ATTEAKPKAV RAPRKRTATP RKRATAAKPA AEESHQGEAV PDEV
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