Gene Mmc1_1771 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_1771 
Symbol 
ID4482597 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp2190208 
End bp2190801 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content52% 
IMG OID639722513 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_865685 
Protein GI117925068 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000506111 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000648476 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAACGAAG CCGATGAGAT CTTGGTAGAA AAAACCAAGC AGGGCGATAA AAAAGCCTAT 
GAGGTGCTGG TGCGCAAATA CCAGGGCCGC GTTGCGTCGG TGATCTCTCG TACGGTTTCT
GACCCGGTGC GGGTGCAGGA CCTTACCCAA GAAGCCTTTC TTAAAGCCTA TCGAGCGTTA
CATCACTTTC GTGGAGATGC CGCCTTTTAT ACGTGGTTGT ACCGCATTGC CGTCAACACG
GCGAAAAATT TTGTCATGTC CCAGGATCGC GGTATTCCCA TGAGCGATAT GGATCTAGAG
GATGCTGATC GCCTTTCGCC TCAATTGCGT GACTATGATA CCCCAGAAAA TCAGGTGCTG
CGTGGCGAGT TAATGGATGC CCTAAAGGTT GCCATTGAAG AGCTGGCCCC CACCATGAAA
CAGGCCATCG CCCTGCGGGA TCTGGAGGGT AAATCTTATG AAGAGATTGC CGAGATCATG
GGTTGCCCCA TTGGCACGGT GCGTTCGCGT ATTTTCCGTG GGCGGCAAGA GATTGTTAAT
AAATTGAAAG ATCATCTTCC CAACGGCAAC TTGGCCGGTC ATCACGGGCT GTAA
 
Protein sequence
MNEADEILVE KTKQGDKKAY EVLVRKYQGR VASVISRTVS DPVRVQDLTQ EAFLKAYRAL 
HHFRGDAAFY TWLYRIAVNT AKNFVMSQDR GIPMSDMDLE DADRLSPQLR DYDTPENQVL
RGELMDALKV AIEELAPTMK QAIALRDLEG KSYEEIAEIM GCPIGTVRSR IFRGRQEIVN
KLKDHLPNGN LAGHHGL