| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1671 |
|---|
| Symbol | |
|---|
| ID | 4480733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2072353 |
|---|
| End bp | 2073816 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639722414 |
|---|
| Product | MiaB-like tRNA modifying enzyme YliG |
|---|
| Protein accession | YP_865586 |
|---|
| Protein GI | 117924969 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.813765 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.219751 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGG AACTGGATCT TGGGGATCTG GATCTGGATG TGGATTTGGA CGCCGACGCA
GAACCTGCCG AGCCCCGTTA TAGTCCTGAA CAGTTGGCCA ATGCCAAAGG CACCGTGGGG
GTGATCTCCT TGGGCTGTTC CAAAAATACG GTGGATTCGG AACAGATGCT GGGCCGCTTT
GTGCGTGAGG GTTACCTGCT GGTCGCCGAT CCGTTGGAGG CCGATCTGCT GGTGGTCAAT
ACCTGCGGCT TTATTGCCGA TGCCGAACGG GAGTCCCGCG AGAGCATTGA TGAAATGGCC
CACATCAAAC AGCTCTACCC CCATAAAAAA CTGATTGTGA CCGGCTGTCT CTCCCAGCGG
TATGGGGCCA AGCTGTTGGA AGATCACCCC CAGATTGATC TGCTGCTGGG GGCCGGTCAC
TACGATACCC TTATCCCGCT ACTGGAGGCC AAAGCGCCCC AGACCGTCGA CCACGTGACC
GAACCCGATG CCGCCGCCAG CCATGACGTG CCGCGCTTAA TCACCACCGG CGAGAGCAGC
GCCTACGTGA AAATTGCGGA AGGGTGTAAC AATAGCTGTA CCTTCTGCAT TATACCCAAG
CTGCGCGGGC CGTTTCGTAG TCGCACCCTG GATGATATTG CCGCCGAAGT GGCTTTACTC
ACCGATGAGG GATGCCATGA GCTGATCTTG GTTTCCCAGG ATACCACCTG GTATGGGCGA
GATCTGCCCC AGCGTAGCAG CTTAACCGAG CTGTTGCAGC GCATCCTTGC CAGTTGCGAA
GCACCCTGGA TTCGTATGCT CTATCTCTAC CCCACGCTGG TCAAAAAGGA GCTGTTGCAG
CTGATCGCCC GTGAGGATCG GCTGCTGCCC TATTTTGATA TTCCCTTGCA GCATGCCGAT
TCGCAGGTGC TTAAACGTAT GCAGCGCAGC GAGCGGTTGG AGACGGTGCG GCAACTGGTT
AAAGATGTGC GTGCCAGCGT GCCAGACGCC ATTCTACGCT CAACCTTTAT CGTGGGTTTT
CCCGGTGAGA GCGAGGCGGA GTTTCAAACC CTGCTGGACT TTATTCAAGA GAGCCAATTG
GACTGGGTGG GGGTGTTTAC CTACTCCGAT GAGCAGGGCA CCGCTGCCTA TGATCTACCG
GATAAGGTGG ATGCCCGAGT GGCCGAGGCG CGGCGTGACC AACTCATGGC CCTGCAACAG
CCCATTACCA GCGCCCGATT GCAGCGCTGG GTCGGGGAGA TTGTGGCGGT CTTGGTGGAG
TCTTACGATG AAGAACACGC CTGCTTCGTG GGGCGTTTTT GGGCGCAAGC CCCCGAAGTG
GATGGTCAGG TGTTGATCCA GTGCAACGAA GAGCTGGAGA TGGGCATCTT TGTGCCAGTA
GCCATCACCC AGGTGTTGGG CTATGACCTC TATGGGGATC TGCTGGAGGT CGATGATCTG
CCCCCCGATG AGGAGCTCGC TTGA
|
|---|
| Protein sequence | MELELDLGDL DLDVDLDADA EPAEPRYSPE QLANAKGTVG VISLGCSKNT VDSEQMLGRF
VREGYLLVAD PLEADLLVVN TCGFIADAER ESRESIDEMA HIKQLYPHKK LIVTGCLSQR
YGAKLLEDHP QIDLLLGAGH YDTLIPLLEA KAPQTVDHVT EPDAAASHDV PRLITTGESS
AYVKIAEGCN NSCTFCIIPK LRGPFRSRTL DDIAAEVALL TDEGCHELIL VSQDTTWYGR
DLPQRSSLTE LLQRILASCE APWIRMLYLY PTLVKKELLQ LIAREDRLLP YFDIPLQHAD
SQVLKRMQRS ERLETVRQLV KDVRASVPDA ILRSTFIVGF PGESEAEFQT LLDFIQESQL
DWVGVFTYSD EQGTAAYDLP DKVDARVAEA RRDQLMALQQ PITSARLQRW VGEIVAVLVE
SYDEEHACFV GRFWAQAPEV DGQVLIQCNE ELEMGIFVPV AITQVLGYDL YGDLLEVDDL
PPDEELA
|
|---|
| |