| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1621 |
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| Symbol | |
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| ID | 4480882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 2007535 |
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| End bp | 2008362 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639722363 |
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| Product | DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase |
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| Protein accession | YP_865536 |
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| Protein GI | 117924919 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
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| TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.39022 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGAAT TACCAGAGGT TGAAACCACC CGCCGGGGTA TTGAACCCGC CCTGGTGGGT
AAACGCCTGT GTGGCGTGGT GGTGCGTCAG CCCCAACTGC GCTGGCCCAT ACCGGTTAAA
ACCCTGGAAA AAGAGTTGGT GGGGCAGGTG ATCCAACAAG TGGCCCGGCG GGCTAAATAT
CTTTTATGGC GCTGCCCGCA AGGAACCTTG CTGGTTCACT TGGGCATGTC TGGTTCTTTG
CGTATTGTGC CCGAGCATAC CCCCCCCGCC AAACATGACC ATGTGGATTG GGTGATGGAA
GGCGGGCAGA TGGTGCGCTT GCATGATCCC CGGCGTTTTG GCGCGGTAGT GTGGATACCG
GTAACCAGCC CAGAAGAAGA ACATCCCCTG CTGGCCAAAT TGGGGCCAGA ACCCCTGCAT
CGCAGCCTCA ATGGTCGTTA CCTCCACCAG GGTTCCCGTG GGCGTCAACT GGCAGTAAAA
AATTATATTA TGGATCAAAG CGTGGTGGTG GGGGTCGGCA ACATCTACGC CAGCGAGGCG
CTGTTTCGCG CCGGCATTGC TCCCGCTCAA GCCGCAGGTA AAGTGGGCTT AGGACGCTAC
CGGGCGCTGG CCTGTGCCAT TAAAGCGGTG TTGGGGGATT CAATCGAACA GGGTGGGACC
ACGCTGCGGG ATTTTATTGG CAGTGATGGC AAACCGGGCT ACTTTGTACA ATCCCTCAAT
GTCTATGGGC GTGCGGGTAA AGCGTGCCCA AAATGTGGCA CCACCATAGA AAAACAGGTA
CTGGGGCAGC GCTCCAGCTA TTATTGCCCC CAATGCCAGC GGGCCTAG
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| Protein sequence | MPELPEVETT RRGIEPALVG KRLCGVVVRQ PQLRWPIPVK TLEKELVGQV IQQVARRAKY
LLWRCPQGTL LVHLGMSGSL RIVPEHTPPA KHDHVDWVME GGQMVRLHDP RRFGAVVWIP
VTSPEEEHPL LAKLGPEPLH RSLNGRYLHQ GSRGRQLAVK NYIMDQSVVV GVGNIYASEA
LFRAGIAPAQ AAGKVGLGRY RALACAIKAV LGDSIEQGGT TLRDFIGSDG KPGYFVQSLN
VYGRAGKACP KCGTTIEKQV LGQRSSYYCP QCQRA
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