| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1553 |
|---|
| Symbol | |
|---|
| ID | 4483149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 1913152 |
|---|
| End bp | 1914108 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639722295 |
|---|
| Product | ADP-glyceromanno-heptose 6-epimerase precursor |
|---|
| Protein accession | YP_865468 |
|---|
| Protein GI | 117924851 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | [TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.687648 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATATTG TAACAGGTGG TGCGGGTTTT ATTGGAGCCA ACATTGTGGC CCAGCTCAAT
GCCCAAGGTA TTCGTGAAAT CCTGGTGGTG GACAATCTGG AAAAAGCGGA TAAATTTCTT
AACCTACGCG ATTTAGAGAT CGCCGATTTT ATGGATAAAC GGGAGTTCCG CGAGCATCTG
GAGCGGGACA TGTTTGTCAA CATGCCCATT CAGGCCATTT TCCATCAAGG CGCCTGCTCC
GATACCATGG AGTATGATGG TCGCTATATG ATGGACAATA ACTTTACCTA CTCCAAGGTG
CTGCTGCACC GGGCGGTGGA GTGGAAAGTG CCTTTTGTGT ATGCCTCCAG CGCGGCAACC
TACGGAGCCA GCGCCCGCTT TGTCGAGTCA CCGGAAAATG AGCGCCCCCT CAATGTGTAT
GGCTACTCCA AGCTGCTGTT TGACCGCTAT GTACAGCGCA ATATGAGCAA AATTGAGAGC
ACCGTGGTGG GACTGCGCTA TTTTAATGTG TACGGCCCCC GTGAAGGGCA CAAAGGTAAA
ATGGCCTCGC AAGCTTTTCA ATTGCGCAAC AAGGTGCTTG CCGATGGTGA GGCGAAGCTG
TTTGAGGGCA CCAATGGCTA TGCCAACGGC GAGCAATCAC GCGATTTTAT CTTTGTTGAA
GATGTGGCCC AGGTCAATCT GCATCTGGCC CACAGCAGCC AGCCGATCAA AGGGGTGTTT
AACCTGGGTA CAGGTAAAAG CCGCAGCTTT AATGCCGTCG CCCAAGCGGT GATCCATAGC
CTTGGCCAAG GCCGTATTGG CTACTTCCCC ATGCCCGCAG GCTTAAAAGA CAAATATCAA
AACTTTACCC AAGCCGACAT GACCCTGTTC CGGGCGCAAA CCGGTTATAC CGCGCCTTTC
ACCGAGCTAG AAGATGGGGT GAAAAAATAT ATGACGGCCT TACAGGAAAC CCCGTGA
|
|---|
| Protein sequence | MYIVTGGAGF IGANIVAQLN AQGIREILVV DNLEKADKFL NLRDLEIADF MDKREFREHL
ERDMFVNMPI QAIFHQGACS DTMEYDGRYM MDNNFTYSKV LLHRAVEWKV PFVYASSAAT
YGASARFVES PENERPLNVY GYSKLLFDRY VQRNMSKIES TVVGLRYFNV YGPREGHKGK
MASQAFQLRN KVLADGEAKL FEGTNGYANG EQSRDFIFVE DVAQVNLHLA HSSQPIKGVF
NLGTGKSRSF NAVAQAVIHS LGQGRIGYFP MPAGLKDKYQ NFTQADMTLF RAQTGYTAPF
TELEDGVKKY MTALQETP
|
|---|
| |