| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1190 |
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| Symbol | |
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| ID | 4480506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 1486062 |
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| End bp | 1487246 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639721933 |
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| Product | homocitrate synthase |
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| Protein accession | YP_865107 |
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| Protein GI | 117924490 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR02660] homocitrate synthase NifV |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000085234 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGATCAAT CGACCGTCAT TTTAGACGAC ACCACCCTGC GGGATGGTGA ACAATCGGCG
GGGGTGGCCT TTAGCTTGGA AGAAAAGCTA AAGATCGCCA CCCTGCTGGA TCGTGCTGGT
GTACCCGAGT TGGAGGTGGG TATACCCGCT ATGGGCGAAG AGGAGCGGCA GGATATCCGC
GCCATCGCGC AACTGGGTTT GCGGGCGCGA CTGTTGGTAT GGCTGCGCAT GCATGATGCC
GACATCAGCC ACCTACCGGG TTTGGGGGTG GCGATGGCGG ATCTCTCCAC CTCGGCTTCG
GATCAACAGA TCCGGCATAA ACTGGGTCGC AATCGGCGTT GGGTACTCAA CACCATCCAA
CACCAAGTCA CCCGGGTTAG CCAAGAGATG GGGATTGAGG TGTGTGTGGG GTGTGAAGAT
GCCTCGCGGG CGGAGATCGA CTTTTTGCTG CGCATGGGCG AAACCGCACA AAAGGCGGGG
GCAAAACGGC TACGCTTTGC CGACACCTTG GGTATTTTGG ACCCCTTTAC CACCTATGAG
CGGTTTAAAA CATTGCGGGC TAATTTGGAT CTGGAGTTAG AGATCCATGC CCACGATGAT
CTGGGGCTGG CGACGGCCAA CACCCTAGCG GCCATTCGCG GTGGGGCCAG CCACGCCAAC
ACCACGGTCA ACGGCCTGGG TGAGCGGGCG GGCAATGCCC CCCTCGAAGA GGTGGCGGTG
GCGTTACAGA CCCTACACGG CGGTTATACC GGTATTCAGT GTGACCAGCT ACAGGTGCTT
TCGCAGTTTG TGGAGAGCGC ATCGGGCCGG CCACTCTCGT GTCAAAAGAG TGTGGTGGGC
AGTGCGGTAT TTCGCCATGA GTCAGGCATC CATGTGGATG GCCTGCTTAA AGATCGCCGC
AACTACCAGG GGGTCGATCC CGACATTTTG GGTCGGCACC ATGAGTTGGT GTTGGGCAAG
CATTCGGGAC GCCAAGGGGT GATTGACGCC TATGGACGCA TGGGGATTGC CATAAGCCAG
GAGCTGGCTG GGCAACTCTT GCAGAGCGTC AAAGGCTTTG CCACCCGTTA TAAGCGCTCC
CCGGAGCAAG CGGAACTGCA AAGTTTTTAC CGCTTCTTAA CCGAGCCTGC CCCCCTAACC
CCCGCCAACC ACGGAGGATT GCTCCATGCA ACACCAAGAG TATGA
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| Protein sequence | MDQSTVILDD TTLRDGEQSA GVAFSLEEKL KIATLLDRAG VPELEVGIPA MGEEERQDIR
AIAQLGLRAR LLVWLRMHDA DISHLPGLGV AMADLSTSAS DQQIRHKLGR NRRWVLNTIQ
HQVTRVSQEM GIEVCVGCED ASRAEIDFLL RMGETAQKAG AKRLRFADTL GILDPFTTYE
RFKTLRANLD LELEIHAHDD LGLATANTLA AIRGGASHAN TTVNGLGERA GNAPLEEVAV
ALQTLHGGYT GIQCDQLQVL SQFVESASGR PLSCQKSVVG SAVFRHESGI HVDGLLKDRR
NYQGVDPDIL GRHHELVLGK HSGRQGVIDA YGRMGIAISQ ELAGQLLQSV KGFATRYKRS
PEQAELQSFY RFLTEPAPLT PANHGGLLHA TPRV
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