| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0817 |
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| Symbol | |
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| ID | 4480853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1020003 |
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| End bp | 1021787 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639721560 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_864742 |
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| Protein GI | 117924125 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.02661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCATCAAC AGACCCTGCG ATTGGTACAT GCCGTGAAAA AAAATCGGTT TAAAACGATC
AAAGCCATCA GCTCCCTCGT GGTACTGGGG TTGGTTGGAT GTACATGGGC GGTGGAGAGC
GGGCTCAATC AGAGTCGTGC AGAAACTGCG GCGGCTACCA CTAAGGAGCC CCACATCTTT
ACCCCAGAGG AGCGGTTGGC CGATGCCACC GCGACCTTTA GCTTTTTAGT GGGGCACCTG
CTGCTGCAAG AGCGTGATTG GAAAGGGGCC GAAGCCGCCT TTACCCAGGT AGTGGAGAGC
GATCCTGGTG CGGTGGAGTC ACAGGTGATG GTGGCGCGCC TCGCGATGCA GGGCAAGGAT
TATGAAAAAG CCCTGGTGCA TGCTCGTAAG GTGGTGGATC TGGCCCCAGA GCATGAGCTG
GCGCGACGTA CGTTGGCGAC CATCCTGCGG GTGCTTAAAC GCTATCCCGA GGCGGTGGTG
CAGTATGAGG AGCTGCTTAA ACAGGATCCT GACGACAGTG GTGTGCGACT GGTGTTGGCG
CAGCTTTATG GGCGTATTGG GCGTGCGGCT GAGTCCAGCA AAGTGGTGGA GGCGCTGCTT
AGCCATCCCT TGATTGGCTG GCGTGCGGAG CTGGCTGTTG GTCGGGGCTG GCTGCACCAA
GATGATCAAG CGCAGGCGTT GGCGGCTTTT GAACGCGCCC GCGCCATGGC CCCAGAGCAG
TTGGAGCCCA CCTTGGCGCT GGGCTCCGTA TTGCAGGATT TGAAAAAAAA TGAAGAGGCC
GAGGCGATCT ATCGGCGCTA TTTGGATGAG CATCCCCGCA GTGAGGTGGT GCATACCCGC
TTGGGCCGTC TGTTGTTGAA TGTGGACGAC CGCGAAGGGG CGCTGGCGGT CTTTAGTAAC
TTGCAAAGGT TGGCCCCATC CAGTGTACAG GCTCACCTGA GCAGTGCCTT TATTCTACTC
TCGCAAGAGC GCTACGAAGA GGCGCTGGGT GCCTTGCGGC TGGCCGAGGT GCAGCAACCC
GAAAATTCTA GCATCCGCTA CTACCTAGGG CAGGCTCTGG AGTATTTAAA GCGGGATGAA
GAGGCGGTTG GTGAGTATGC CAAGGTGCAG TTGGGCGAGA CCTTCTATCC CGAGTCGCAG
ATTCGCATCG CCTATTTGCA GTCGGATCTT GGGCGTAAAA AAGAGGGGGT AGAGATTGTT
GAAAGCCTCT ATAAGAGCCA TCCCACACGG GTGGATGTGG TGTTGGCGCT TAATTTTTTG
CAGCTACAAA ACGATCAATA TGAGCAGGTG ATTCAGTCTA CGGAGGAGGG GTTAAAGTTA
GATCCCGAGG AGTCCCGTTT TCTATTTAAC CGTGCCATGG CCTACGACAA GCTGGGTAAG
TGGAAAGAGG CTGAAGCCGA TTTGGAAGCC TACATTAAGG TTAATCCCAA TGACGCTCAT
GCACTGAACT ATCTCGGTTA TACCTGGGCA GACCGCAATG AGAATTTGGA AGGCTCGCTG
GAGCTGTTAA AAAAGGCCGC CAAGTTGGCA CCCGGGGATG GTTTTATTAC CGACAGTCTG
GGCTGGGTGC TGTTTCGCAT GAACCGTCTC TCTGAGTCGG TGGACGCCAT GCGTGAGGCC
GTGCGCTTGC AGCCCGATGA TGCTACCATC GTTGAACATC TGGGGGATGT GTTAAAGGCT
TTGGGTCGTG ATAAAGAGGC GGCGAACTTT TGGCAAAAAT ATCTCAAGAT CAGTCCAGAT
AATGCGAATC TCAAGGAGAA GTTACGCCAG CTTAACTTGC CATAA
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| Protein sequence | MHQQTLRLVH AVKKNRFKTI KAISSLVVLG LVGCTWAVES GLNQSRAETA AATTKEPHIF
TPEERLADAT ATFSFLVGHL LLQERDWKGA EAAFTQVVES DPGAVESQVM VARLAMQGKD
YEKALVHARK VVDLAPEHEL ARRTLATILR VLKRYPEAVV QYEELLKQDP DDSGVRLVLA
QLYGRIGRAA ESSKVVEALL SHPLIGWRAE LAVGRGWLHQ DDQAQALAAF ERARAMAPEQ
LEPTLALGSV LQDLKKNEEA EAIYRRYLDE HPRSEVVHTR LGRLLLNVDD REGALAVFSN
LQRLAPSSVQ AHLSSAFILL SQERYEEALG ALRLAEVQQP ENSSIRYYLG QALEYLKRDE
EAVGEYAKVQ LGETFYPESQ IRIAYLQSDL GRKKEGVEIV ESLYKSHPTR VDVVLALNFL
QLQNDQYEQV IQSTEEGLKL DPEESRFLFN RAMAYDKLGK WKEAEADLEA YIKVNPNDAH
ALNYLGYTWA DRNENLEGSL ELLKKAAKLA PGDGFITDSL GWVLFRMNRL SESVDAMREA
VRLQPDDATI VEHLGDVLKA LGRDKEAANF WQKYLKISPD NANLKEKLRQ LNLP
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