Gene Mmc1_0306 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_0306 
Symbol 
ID4481654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp353518 
End bp354384 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content57% 
IMG OID639721055 
Productsqualene/phytoene synthase 
Protein accessionYP_864239 
Protein GI117923622 
COG category[I] Lipid transport and metabolism 
COG ID[COG1562] Phytoene/squalene synthetase 
TIGRFAM ID[TIGR03465] squalene synthase HpnD 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCCAG ATCTCTATTG CCAGGCGCGT GTAAAACGCA GTGGTAGCTC TTTTTATTGG 
CCCATGCGGC TGTTGCCGGC GCACAAACGG CGGGGTCTGT TTGCCCTCTA TGCCTTCTGC
CGTGAGGTGG ATGATATTGT GGATCGGCAA TTGGATCCTC GTGCAGCGCA CATGAAACTG
GCGTGGTGGC ACGAGGAGAT TGTGGAGGTT TTTACCGGTC AGCCCCGTCA CCCTGTCGCT
AGGGCATTGC ATGCCCTAAA AGATCAATAT GGGTGGCAAA TGGCCCCCTT TATAGAGATT
TTGCAGGGTA TGGAGATGGA TCTGCAACCG CGAAACTATG AGAACTGGCA GGAGCTAGAG
GGCTACTGCC ATAAGGTTTC GGTGGCGGTG GGTTTGGCGG CTTTGCCGGT CTTTGGGGTA
ACGGGGGAGC GGGCGCAGCA GTTTGCCCAT CACCTTGGCA TGGCTTTGCA GTTGACCAAT
ATTCTGCGAG ATCTGTTCGA GGATGGGCAG ATGGGGCGTG TTTATCTGCC GCAAACCGTG
TTGCAGGCCC ACGGGGTTCA ACATCAAGGG ATATTGGACG GGGAATGGCA GCCGGCGTTG
GTAGCCGCGT TGCAGGAGGT TGATGCGCGT ATTGAGAGCC ACTTTGCCCA AGCCCGTGAG
CTGGTGCAAG GCGAGCACTT TGCCCAGCTT ACTGCCGCAC GTTCGATGGG CGCGGTCTAC
CATGCCCGGT TGCGCCGCAT ACGGGCCGCT GGCTATCGGG TTGATCAGCA GCCAGCCCAG
TTGAGTAAAA GTTATAAGCT GTGGCTCTGT CTGCGCTGTT GGTTGGCCAG CCGGGTGGGC
TGGTTGCGGG CGTATGATGC CCTTTGA
 
Protein sequence
MTPDLYCQAR VKRSGSSFYW PMRLLPAHKR RGLFALYAFC REVDDIVDRQ LDPRAAHMKL 
AWWHEEIVEV FTGQPRHPVA RALHALKDQY GWQMAPFIEI LQGMEMDLQP RNYENWQELE
GYCHKVSVAV GLAALPVFGV TGERAQQFAH HLGMALQLTN ILRDLFEDGQ MGRVYLPQTV
LQAHGVQHQG ILDGEWQPAL VAALQEVDAR IESHFAQARE LVQGEHFAQL TAARSMGAVY
HARLRRIRAA GYRVDQQPAQ LSKSYKLWLC LRCWLASRVG WLRAYDAL