Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_0306 |
Symbol | |
ID | 4481654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 353518 |
End bp | 354384 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639721055 |
Product | squalene/phytoene synthase |
Protein accession | YP_864239 |
Protein GI | 117923622 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGCCAG ATCTCTATTG CCAGGCGCGT GTAAAACGCA GTGGTAGCTC TTTTTATTGG CCCATGCGGC TGTTGCCGGC GCACAAACGG CGGGGTCTGT TTGCCCTCTA TGCCTTCTGC CGTGAGGTGG ATGATATTGT GGATCGGCAA TTGGATCCTC GTGCAGCGCA CATGAAACTG GCGTGGTGGC ACGAGGAGAT TGTGGAGGTT TTTACCGGTC AGCCCCGTCA CCCTGTCGCT AGGGCATTGC ATGCCCTAAA AGATCAATAT GGGTGGCAAA TGGCCCCCTT TATAGAGATT TTGCAGGGTA TGGAGATGGA TCTGCAACCG CGAAACTATG AGAACTGGCA GGAGCTAGAG GGCTACTGCC ATAAGGTTTC GGTGGCGGTG GGTTTGGCGG CTTTGCCGGT CTTTGGGGTA ACGGGGGAGC GGGCGCAGCA GTTTGCCCAT CACCTTGGCA TGGCTTTGCA GTTGACCAAT ATTCTGCGAG ATCTGTTCGA GGATGGGCAG ATGGGGCGTG TTTATCTGCC GCAAACCGTG TTGCAGGCCC ACGGGGTTCA ACATCAAGGG ATATTGGACG GGGAATGGCA GCCGGCGTTG GTAGCCGCGT TGCAGGAGGT TGATGCGCGT ATTGAGAGCC ACTTTGCCCA AGCCCGTGAG CTGGTGCAAG GCGAGCACTT TGCCCAGCTT ACTGCCGCAC GTTCGATGGG CGCGGTCTAC CATGCCCGGT TGCGCCGCAT ACGGGCCGCT GGCTATCGGG TTGATCAGCA GCCAGCCCAG TTGAGTAAAA GTTATAAGCT GTGGCTCTGT CTGCGCTGTT GGTTGGCCAG CCGGGTGGGC TGGTTGCGGG CGTATGATGC CCTTTGA
|
Protein sequence | MTPDLYCQAR VKRSGSSFYW PMRLLPAHKR RGLFALYAFC REVDDIVDRQ LDPRAAHMKL AWWHEEIVEV FTGQPRHPVA RALHALKDQY GWQMAPFIEI LQGMEMDLQP RNYENWQELE GYCHKVSVAV GLAALPVFGV TGERAQQFAH HLGMALQLTN ILRDLFEDGQ MGRVYLPQTV LQAHGVQHQG ILDGEWQPAL VAALQEVDAR IESHFAQARE LVQGEHFAQL TAARSMGAVY HARLRRIRAA GYRVDQQPAQ LSKSYKLWLC LRCWLASRVG WLRAYDAL
|
| |