| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0052 |
|---|
| Symbol | |
|---|
| ID | 4482620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 54428 |
|---|
| End bp | 55600 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639720798 |
|---|
| Product | coproporphyrinogen III oxidase, anaerobic |
|---|
| Protein accession | YP_863987 |
|---|
| Protein GI | 117923370 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0403831 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.42577 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATAT TTCCCCTCTC TCTCTATCTC CATATTCCTT ACTGTGTGCA TAAGTGTCCC
TATTGTGATT TTCATTCACG GGTCGAGGTG CAGGTGCCCC AGGAGCGTTA TGTGGATGCC
CTGCTCATGG AGTTGGGTAT GTGGCGGCGG CGTTTTTCAC AGGATGCGCG GCCTTTGCAG
AGCATTTTTT TGGGCGGGGG TACGCCATCG TTATTTGATC CACCGCAGAT TGGCCGGTTA
ATGGCCGGTA TTGGGGCGAT TTGGCCGTTG GAGAGCGGTT GTGAGGTGAC GATGGAGGGT
AATCCGGAGT CACTCACGCA GGGGCGTTTG GCCGGTTACG GTGAGGCGGG CATTACCCGT
ATGAGTGTGG GGGTGCAGGC GTTGGATGAG GGGCGGTTGC GTCAGTTGCA GCGCCCCCAT
GACCGGGCGC AGGCGTTACA GGGGTTAGGG TGGTTGGCAC AGGCGGGGTT TAGCAGCTGG
AGTGCGGATT TCATATTTGC CACGCCGGGC CATACGGTGG CGGGGTGGTT GGAGGAGTTG
GCAGAGGTAT TGGCTTTTGC GCCGCCGCAT CTCTCCTGTT ACGGCTTGAC GGTGGAGCCG
GGCACGCCCT TTTTTCAGCG GCAGCAGGGG GGTGAGGCGT TGGTTGCGGA TGAGGAGCGA
CAGCTCGCAC TGTTGGAGGC CACCTATGAG CGGCTGACAG CGGCGGGGTT GCCTTCTTAT
GAAATCAGCA ATTTTGCGCG GGCTGGGCAT GGGTGCAGGC ACAATGTGAA CTATTGGCGG
TTTGGGGATT ATTTGGGGGT GGGGGTGGCG GCGCATGGCA AATGGAGTGA TGCGGATGGC
GTGGTGTGGC GCAGTGCCAA TCTGGCGGAT GCAGCACGTT ATATGGCGTG TGTTGAGGCG
GGACGTTCGC CATGGGTGAG GGATCAGCGG TTGACCCCGC AGGAGGCGGG TAATGAGGCG
TTGGTGATGG GTTTGCGTAT GGGCGAGGGG ATGAGCAAGG CGACCTATCA GTGGGTAAGG
GGGGTCTCTT TACAGCAGAG CGTGGGTGAT GGGCTGGCAT GGTTTGAGCG ACAGGGTATG
CTTGCGCAGA GTGCAACGCA TGTGTGGTTG ACACCACGGG GGTTACGGTT GGCGGATGGG
GTAATGGCGG AGTTGATGGA GGTTGAGCCT TAA
|
|---|
| Protein sequence | MTIFPLSLYL HIPYCVHKCP YCDFHSRVEV QVPQERYVDA LLMELGMWRR RFSQDARPLQ
SIFLGGGTPS LFDPPQIGRL MAGIGAIWPL ESGCEVTMEG NPESLTQGRL AGYGEAGITR
MSVGVQALDE GRLRQLQRPH DRAQALQGLG WLAQAGFSSW SADFIFATPG HTVAGWLEEL
AEVLAFAPPH LSCYGLTVEP GTPFFQRQQG GEALVADEER QLALLEATYE RLTAAGLPSY
EISNFARAGH GCRHNVNYWR FGDYLGVGVA AHGKWSDADG VVWRSANLAD AARYMACVEA
GRSPWVRDQR LTPQEAGNEA LVMGLRMGEG MSKATYQWVR GVSLQQSVGD GLAWFERQGM
LAQSATHVWL TPRGLRLADG VMAELMEVEP
|
|---|
| |