| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0022 |
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| Symbol | |
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| ID | 4480708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 23815 |
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| End bp | 24675 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639720768 |
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| Product | shikimate dehydrogenase |
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| Protein accession | YP_863957 |
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| Protein GI | 117923340 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.301777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCTCTA AAGCGCTTAA TATTAATGGT GAAACAGGCC TACTTGCGGT CATTGGGGAC
CCTGTAAGTC ACTCCCTTTC ACCCAAGATG CACAATCTGG CCCTGCGTCA TTGTCAACTC
AATTATTGTT ATGTGGCGCT ACCGGTCAAA CCACACAATT TAGTGCGAGC GGTGCAGGGT
TTTGCGGCTA TGGGCATGCG CGGTTTTAAT GCCACCATTC CCCACAAAGA GAACCTGCTC
CCGCTGATGC ACACCCTTAG TGAAGAGGCC AGCCATATTG GTGCCGTTAA CACCGTGGTG
ATTGATGACG ATGGCAAAAT GACCGGTCAT AATACCGATG CCTATGGGTT TATTACCGGA
CTTAAAGAGG CTTGGCGTAG TGACCTGTCG GGGTTAACCG CCATTATGTT GGGTTCTGGT
GGCGCGGCAC GGGCCATTTT ATATGGACTT ATTCAAGCCA AAGCCGCACG GGTTATCATC
GCCAACCGTA CCATTGAGCG TGCGCAGGCT CTGATTGAGG CCATGCAACC CTATGCACCC
AACACACAGC TTATGGTTGC ACCGACCCAA GCCGATCAAC TGCCGCTGGA GTCGTGTGAC
CTGCTTATTA ACACCACCAG TATGGGGTTA AAGGGAGAGA CCATTCCCTA TATTGACTTG
GCACGACTTC CACACCACGC CTTCGTTAGT GATATTGTCT ATGGTGCCCA TCCTACCCCA
CTGCTACGGG CCACCGCACA ACATCAATTA GGCGGGCAGG ATGGTCTGCC CATGTTGATC
CATCAAGGGG CCAAAGCCTT TGAATTATGG ACAGGGCACA GCATGCCCGT TGAGCTGGTT
GAGCATACAC TACGTCAGTA A
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| Protein sequence | MLSKALNING ETGLLAVIGD PVSHSLSPKM HNLALRHCQL NYCYVALPVK PHNLVRAVQG
FAAMGMRGFN ATIPHKENLL PLMHTLSEEA SHIGAVNTVV IDDDGKMTGH NTDAYGFITG
LKEAWRSDLS GLTAIMLGSG GAARAILYGL IQAKAARVII ANRTIERAQA LIEAMQPYAP
NTQLMVAPTQ ADQLPLESCD LLINTTSMGL KGETIPYIDL ARLPHHAFVS DIVYGAHPTP
LLRATAQHQL GGQDGLPMLI HQGAKAFELW TGHSMPVELV EHTLRQ
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