Gene Mmc1_0015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_0015 
SymbolhslU 
ID4480642 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp17290 
End bp18675 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content54% 
IMG OID639720761 
ProductATP-dependent protease ATP-binding subunit HslU 
Protein accessionYP_863950 
Protein GI117923333 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1220] ATP-dependent protease HslVU (ClpYQ), ATPase subunit 
TIGRFAM ID[TIGR00390] ATP-dependent protease HslVU, ATPase subunit 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGAGT TTACCCCCCG TGAGATTGTT TCGGAGTTGG ATCGTTATAT TATTGGTCAG 
AACATGGCAA AGAGGGCGGT AGCCATTGCA TTGCGCAATC GTTGGCGGCG TCAGCGCTTG
AGTGCGGAGA TGCGGGAGGA GGTCTATCCC AAAAACATTC TCATGATCGG GCCAACGGGT
GTGGGCAAGA CGGAGATTGC GCGTCGATTG GCCAAGTTGG CGCGTGCGCC GTTTATTAAG
GTTGAGGCGA CCAAATTTAC CGAGGTTGGT TATGTGGGCC GGGATGTTGA GTCCATTGTG
CGGGATTTGG TGGAGATGGG CATAACCATG GTAACGGAGG AGGCCAAGGT TAAGGTGCAG
TTTCAGGCCG AAGATCAGGC TGAGGAGCGG TTACTGGATA TTTTATTGCC TTTACCGAGC
ACGGGTCAGG GTGAGGGTAG CGCTCATTTT GGTCTGTTTG GTCAGATGGA GGGTTCATCG
GTCAAGCCAG AGCCTACGGC GCAGCAGAAG GAGAGCCGTC AAAAGATGCG CAAAATGCTG
CGGGAGGGCA AATTGGATGA CCGGGAGATC GACATTGATT TAAAGGAGCA GCGGCGGGTG
CCGATGATGG AGGTGATTAC ACCTCAGGGT ATGGAGGGGA TTAATTTACA GGATATGTTG
GGCGGATTGA TGGGGGGGCG CACCAAGACC CGGCGGGTCA AGGTGGGAGA GGCCATGAAG
TTGCTCACGG AAGAAGAAGC GGGCAAGTTG GTGGATCAAG ATACGGTGCA GCAGGTAGCC
ATTGAGCGGG TGGAGCAGTC GGGCATTGTC TTTTTGGACG AACTGGACAA AGTGTGCGCG
CGGGGGAGTG AAACACGGGG CGGGGATGTA TCCCGCGAGG GTGTGCAGCG TGATCTTTTG
CCTTTGGTGG AGGGCACCAC GGTATCGACC AAGTATGGCA TGGTTAAGAG TGACCATATT
CTTTTCATTG CGTCGGGTGC GTTTCAATTA GCCAAGCCGT CGGATTTATT ACCGGAGTTA
CAGGGTCGTT TACCGATTAG GGTTGAGTTA GAGAGTTTGG GCAAGGGGGA GTTTGTACGT
ATTTTGACGG AGCCAGAGAA CGCGTTGACA CGTCAGTATG CGGCGCTGAT GGGGGTTGAA
AACATCGAGT TGGTTTTCAC GGATGAGGGT ATTGAGGCGT TGGCAGAGAT CGCCACCCGG
GTGAACGAGA CGGCGGAGAA TATTGGGGCG CGTCGTTTGC ACACGGTGAT GGAGAAGTTA
TTGGATGAGT TATCATTCAG TGCGCCAGAT CGTGGTGGTG AGCGGGTTGT GATTGATGCG
GCGTATGTAA ACCGTCAATT GAGCGATTTG GCGGCGGATG AGGACCTTTC GCGCTTTATC
CTGTAG
 
Protein sequence
MSEFTPREIV SELDRYIIGQ NMAKRAVAIA LRNRWRRQRL SAEMREEVYP KNILMIGPTG 
VGKTEIARRL AKLARAPFIK VEATKFTEVG YVGRDVESIV RDLVEMGITM VTEEAKVKVQ
FQAEDQAEER LLDILLPLPS TGQGEGSAHF GLFGQMEGSS VKPEPTAQQK ESRQKMRKML
REGKLDDREI DIDLKEQRRV PMMEVITPQG MEGINLQDML GGLMGGRTKT RRVKVGEAMK
LLTEEEAGKL VDQDTVQQVA IERVEQSGIV FLDELDKVCA RGSETRGGDV SREGVQRDLL
PLVEGTTVST KYGMVKSDHI LFIASGAFQL AKPSDLLPEL QGRLPIRVEL ESLGKGEFVR
ILTEPENALT RQYAALMGVE NIELVFTDEG IEALAEIATR VNETAENIGA RRLHTVMEKL
LDELSFSAPD RGGERVVIDA AYVNRQLSDL AADEDLSRFI L