Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_4293 |
Symbol | |
ID | 4475947 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008573 |
Strand | + |
Start bp | 175971 |
End bp | 177167 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 639720650 |
Product | outer membrane porin |
Protein accession | YP_863808 |
Protein GI | 117676232 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0195017 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.981008 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGTGTTAT TAGCAATGAG TAATAATGCA CTCTCTAATG ATGATATTGA GAGTTTTTCT GAATGGATAC ACAATGGTAA TGTTGGAGGT ACAGCGAGAT CGTACTATTT CGAACAAGAT TTTGACGATT CAAATACAGA GAATAGCTCG ATTTGGGTGA ATGGTGGTAA TGTTACTTTT AATACATCAG AGTTTAATGG GTTTAAATTG GGAGGAGAGG TACAGGGGTC ATACGTTAGT AATATCAATG ATGATGATGA TACAACTGCG GGAGATATGA ACGCACAAGG TCTTGTATTA TCGGAAGCTT TTTTGAAGTA TCAGTTTGGT GATACTGTGT TTTCTGGAGG TAGACAACAC TTTTCATCAC CCCTTATCGC TAACTCAGGT TCAAGATTGA TAAATGAATC TTTTGAAATG TATCAGGTGT CTTCAAGTCA TTTTGATGGT ACTGATATTT CGATTGGATA TGTGACTAAA TATCAGACTC GAACAGATAA ATCGTTTTAT GTTGATAATG AATTTGTTGA TTTTGATTTT AATGGTTCTG GCTCTCCTGG CGATTTTTAT AAAATAGGTA ATGATGGCGT TTTTTTCGTA CAAGTTAACA AGCGAATCGC TAAAAAATTC AAAGTTAACT CACAGTACGC AAATGTAATA AATGAAGTCC AAGCACTTTA TGCGGATGTC GAATATACAT TGCCAACTAA CTTTAACAGT TATATTGCAA TGCAATATTA CAAAACTAAG TGGGATAAAA ATGAACTAGT CGATAATGAT CTTTTGGGCT TTAAAGTAGG TTTCAGTCAG GGAGGAGTAG ATTTTTTTGC TGGTTATACA TTAGCTGGAG GAAATGAAGG AGATAATAGA GTTTTTAGAG GCATTGGTCA AGGAGCTTAT TATCAGTTTA CTGCCACTAC TAAAACTGCG GGTGTTGGGG CATTTGAATC TGGAACAAAT TCGTATCAAT TGGGGTTAGG TTCTGCTATC TCTAATCTTA AAGGTAAAAT ATTTTATACA TCTTTTGACA ATCCCATAGT GGGAAAAGAT TTAAATGAAT GGACGGTTAA TCTTGCATAT CAATTTGATG GTAAACTCGA AAATATCGGT ATATCAATTG ATTTTTCAAT ATTGGATTAT GAAAACAATC AAAAAGACGC TACAGATTTA AGAACGAAAT TCACTTACAG CTTTTAA
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Protein sequence | MVLLAMSNNA LSNDDIESFS EWIHNGNVGG TARSYYFEQD FDDSNTENSS IWVNGGNVTF NTSEFNGFKL GGEVQGSYVS NINDDDDTTA GDMNAQGLVL SEAFLKYQFG DTVFSGGRQH FSSPLIANSG SRLINESFEM YQVSSSHFDG TDISIGYVTK YQTRTDKSFY VDNEFVDFDF NGSGSPGDFY KIGNDGVFFV QVNKRIAKKF KVNSQYANVI NEVQALYADV EYTLPTNFNS YIAMQYYKTK WDKNELVDND LLGFKVGFSQ GGVDFFAGYT LAGGNEGDNR VFRGIGQGAY YQFTATTKTA GVGAFESGTN SYQLGLGSAI SNLKGKIFYT SFDNPIVGKD LNEWTVNLAY QFDGKLENIG ISIDFSILDY ENNQKDATDL RTKFTYSF
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