Gene Shewana3_4247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_4247 
Symbol 
ID4475840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008573 
Strand
Start bp122362 
End bp123075 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content42% 
IMG OID639720604 
ProductTatD-related deoxyribonuclease 
Protein accessionYP_863762 
Protein GI117676186 
COG category[L] Replication, recombination and repair 
COG ID[COG0084] Mg-dependent DNase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.555643 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000153731 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCATTGCC ATCTTGATCT TTATCCCGAT CCATTCAAAG TGGCTCAGGA GTGTAAACAT 
CGTGGAACCT ACGTGTTATC CGTGACAACA ACTCCCAGGG CCTGGGAAGG CAGTAAGAGG
CTTGAAAATA ATTACCATCG AATTCGCACT GCTTTAGGCC TTCATCCGCA AATCGCACAT
CAAAGATCAC ATGAGTTAGA ACTTTTTGAT GCATTACTTT CGGAAGCTAA GTACGTGGGA
GAGATAGGAC TCGATGGAAG TAGTGGTTTT AAAGAGCATT GGGACGTTCA GCTAAAGGTA
TTTCGCCATA TACTCAGATC TGTTAATCAT GCAGGCGGAC GGATCATGAG CATTCACAGC
CGTGCCAGTG CAGTAGAAGT ATTGAATGAA CTTACTGGTA TTGACGGTAT CCCTGTATTG
CACTGGTTTA CTGGGACAAA AAGCCAACTA ATGAGAGCGA TAGATATTGG CTGTTGGTTT
TCAGTTGGGC CAGCAATGCT CAGTACTAAA AAAGGAGTTG AATTTGCTTC AATAATTCCC
CGTCACCGTA TTCTGACAGA GACAGATGGA CCATTTGCTA AACATTTAAC TAAACCACTT
TTTCCTTGGG AAGTTGATTT GGCTACTAAG CAGTTAGCGG AAATTTGGCA GTGTGATGAA
GTTGAGGCAA ATGCTATGAT CATGTCAAAT TTTAATTGTT TGGTACGAAC GTAA
 
Protein sequence
MHCHLDLYPD PFKVAQECKH RGTYVLSVTT TPRAWEGSKR LENNYHRIRT ALGLHPQIAH 
QRSHELELFD ALLSEAKYVG EIGLDGSSGF KEHWDVQLKV FRHILRSVNH AGGRIMSIHS
RASAVEVLNE LTGIDGIPVL HWFTGTKSQL MRAIDIGCWF SVGPAMLSTK KGVEFASIIP
RHRILTETDG PFAKHLTKPL FPWEVDLATK QLAEIWQCDE VEANAMIMSN FNCLVRT