Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_4218 |
Symbol | |
ID | 4475977 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008573 |
Strand | - |
Start bp | 89025 |
End bp | 91709 |
Gene Length | 2685 bp |
Protein Length | 894 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 639720576 |
Product | Type IV secretory pathway VirB4 components-like protein |
Protein accession | YP_863734 |
Protein GI | 117676158 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.750787 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAACTG TAAATAACTG GAAAAATAGT CTAGGCATTG AGAAATATTC CTCAATCATC CCAATCTTAG ATGAATTTGT GAGTGAGGAA GGGGAACATC TTGGTTACAT CCTAGAAGGG GGTTACCTTG GCGTAACGTG GCTATGCCCA CCGTCAGGTG GTTATGGTGC GAGTACGATT TCCACGCTGG ATTCGATTTT CAAAAAAGTC TATCCAGAAG GGACTGTGCT GCAATTCTCG CTAGTGGCTT CAGACGACTT AGTAACAGTG TTAGACAATT ACCGACATTG CCGTGGCAAG CGTAATCGGT TCGATACGGT CATTGATAAT GACAATATGA CCGAATACAT GGTTGATTAT TATAAAGCGC TTGCTGATAC CTCAATCCCT TCGCGAGATA TGGAAGGTGT ACCGCTTCGC AACTTCGAGG TATGGGCGTC AATCAAGGTG CCTATCAAGA AAGCCATGCC GTCTACAGAG GAAGTCGAAG ATTTTGTCGA TATGGCTAAC AACCATGAAG CGTCATTACA ACAAATCTTT GGTGTAGCGA CCAAAATGCA ACCGGAGATC CTAATTAACC GATTGCAGAT GATCCACAAC CCATCCCCGA ATGCAGTTTG GCGCCGTGGA ATTAAAGTAG ATGGCAGACA AGGCTGTTAC CGTTCTTCTC AGCCCATCCG TGCGCAGTTA CTTGAACCTG GCACTGAGGT CAAAGTCGAT GGTTCTGATT ACATGGCGAT TAAAGCGGAA GATGGTTCTA AACGATTTAT TCAAAGTGTG AGCATTAAAG AGTTCCCAGA TTCCATTTAC CAAGGCACGT TACATTTAAT GACTGGCGAT TGGTTGAAAG GGGATGATGG CGCTATTCCC GGCAATTTCA TGATCAACCT CGTGGTTGAA ATGAGCCCTA AGAAAGTAGC TAAGGATTAC TCCAAGCGCC GCCTAATGGC TAAACAGATA GGTGAAGGCC CGTGGGCTCG TTGGATTTCG TCTTTGAAAT ACGGCCTGCA AGATTTTGAA TACTACGAGC ATTATCTAGA GCGCGAAAAG GCTCAGCATT GCCGCTTTCA TTTAAACTTT CAAATGTGGG GACCGACTTT AAAGTCAGTT AAGAACAGTA CTAAAAAACT AATCACGCGC ATGGAAGGCT TTAGTTGGTC AGCTGGCGTG GATAGCTTGA TTGGCCGTTT CACTTGGCTA AATGGTCTGC CAATGTGTAC CTCAAGTGAA GTCAGTAGTT TCATTGAACG CTTTGACTTT CTCCCGAGTA ACTTGGTCAA GTTCTTCGTT CCTATGGTGG CATCGTGGCC AGGGAACGCA GTGCGACATC CTGTGCTGAC ATACATTGCC CGTGATGGTC AGTTAATCAC CTTTGACCCA TTAAAGTCAG ACTCCAATTA CAACATCTTT ATAACCGCAA CCTCTGGCGC TGGGAAGTCG GTCTCTGCTA ACTATTTGAT TGAAGGTCTA CTTTCAACCG GAGAAAACCG TTATCCAGAT GCACTTGGTA ATATCCACGG TGATCCTGAT GGTGGCCGCG TGTTCATCAT CGACTCAGGC CGCTCATACG TTAAAACAAC AGAGTTGTAC GCAGGACAGT TCGTTGAGGT TATGCCGGAC AACCGATTTG CGTTTAACCT ATGTCCTTTT AAGAGTATCG ACGAATCTCA AAAAGATACT GATGAAGGCG TTGTAGATAG TGACGCTAAC AACTATTTAG GCGCTCAAGG TGAAATGCTG TTGAACGTCC TGAAGTTGAT GGCTTTCCCA CTTGGAGACT GTAACAGCTA TCAATACTCT GCAATGTCAG TATTGCTCAT GCAACTGTGG AACGAGAAGG GTAGGGAAAC CAGTATTGAC GATTTCGCTG ATGCTTGTGC AAAACATCCC CGTGAAGAAG TGCGGCAAAT CAGCGACCAA TTGACTCCTT GGTGTTACTT ACGCGGTGGC CAAAACAGTT GGATGTTCAA CCCTAACAAG CCGCCCATTC AGTTTGAGAA GGATTTAGTG GTGCTAGAGC TTGACGGACT TAACGGTTCA GACCAGCTCA AAGCAGTGTG TATCATGCTG TGTATTCAAC GTATTCAACA GGAAATGTTT AGGCATGACC AACTGCATAT TGTGAAAGCC TTTATTCTCG ATGAAGCGTG GGAGTTCTTG AAGGAAAACA AGGGTGTAGA TGAGCAGACC CGTCAGGTTC TTCAAACTCT GGCAAAATTC CTCGAATCAG GTTGGCGTCG TTTCCGTAAG TACAACAGCT TGGGTGTGTG TATTTCGCAA TCGATGAAGG ATGCCAACGA ATCGCCTGCG GGTATCGCGA TGGCCAGTAA CTCGGCTCAC TTATTCTACC TCATGCAAAA CGGTGAGGAA CTGGCCCGAC TCAATAAAGA GGGTAAGTTC ATTGAGCAGG ATTACCTTTT ACTGAGGAAT ATCAAGACGG TTAGGCCGTT TTTCAGTGAA GTTCTGTTAT GCAGTGGCGG AACAAAATCT GTAGGCAGGC TATATCTGCC AAGGGCTAAA GCACTGACTT ACTCTACCGC TCCAGACGAG AAAAAACAGA TTGAAATCAT GATGAAAGAC AAGGGGGTCG ATATGTTTAC CGCTTGCCAG ATGATTGCTG AAAGGGAAGG AAAAGATCTA GTCGGGACAT GGCGACGTCG ATTCGACGCC GAAAATGAAT CTTAG
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Protein sequence | MTTVNNWKNS LGIEKYSSII PILDEFVSEE GEHLGYILEG GYLGVTWLCP PSGGYGASTI STLDSIFKKV YPEGTVLQFS LVASDDLVTV LDNYRHCRGK RNRFDTVIDN DNMTEYMVDY YKALADTSIP SRDMEGVPLR NFEVWASIKV PIKKAMPSTE EVEDFVDMAN NHEASLQQIF GVATKMQPEI LINRLQMIHN PSPNAVWRRG IKVDGRQGCY RSSQPIRAQL LEPGTEVKVD GSDYMAIKAE DGSKRFIQSV SIKEFPDSIY QGTLHLMTGD WLKGDDGAIP GNFMINLVVE MSPKKVAKDY SKRRLMAKQI GEGPWARWIS SLKYGLQDFE YYEHYLEREK AQHCRFHLNF QMWGPTLKSV KNSTKKLITR MEGFSWSAGV DSLIGRFTWL NGLPMCTSSE VSSFIERFDF LPSNLVKFFV PMVASWPGNA VRHPVLTYIA RDGQLITFDP LKSDSNYNIF ITATSGAGKS VSANYLIEGL LSTGENRYPD ALGNIHGDPD GGRVFIIDSG RSYVKTTELY AGQFVEVMPD NRFAFNLCPF KSIDESQKDT DEGVVDSDAN NYLGAQGEML LNVLKLMAFP LGDCNSYQYS AMSVLLMQLW NEKGRETSID DFADACAKHP REEVRQISDQ LTPWCYLRGG QNSWMFNPNK PPIQFEKDLV VLELDGLNGS DQLKAVCIML CIQRIQQEMF RHDQLHIVKA FILDEAWEFL KENKGVDEQT RQVLQTLAKF LESGWRRFRK YNSLGVCISQ SMKDANESPA GIAMASNSAH LFYLMQNGEE LARLNKEGKF IEQDYLLLRN IKTVRPFFSE VLLCSGGTKS VGRLYLPRAK ALTYSTAPDE KKQIEIMMKD KGVDMFTACQ MIAEREGKDL VGTWRRRFDA ENES
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