Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_4208 |
Symbol | |
ID | 4475879 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008573 |
Strand | - |
Start bp | 76728 |
End bp | 78023 |
Gene Length | 1296 bp |
Protein Length | 431 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639720566 |
Product | hypothetical protein |
Protein accession | YP_863724 |
Protein GI | 117676148 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02742] type-F conjugative transfer system pilin assembly protein TrbC |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000759939 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCTTACCT CATTATCTAA TAGACAGTTT CTTGTTAGCT TGTTTGTGGC GGTATCGATG TCTGCCATTT ATTTCGATGC AATGGCTACA GACGATAATC AGCAGTTTAT TCTGGATGCA AAACGACAGA TGGATGACGT CCGTAGCCAA ATCGAGGCTA TGAGGCAGAA CAATACCCAG CAGCCCCAAG GTGGCCTCCC CGCTGCTTGG GGGCAGCAAT CTTACATTTC ACAAGCACAA ATGCTCACCC AGCAGGCCGA TGCGATCAGG TATCAAGTGC TGCCAAAGCC AGAACCTGTC ACGCCTGTTG TGCAGCAAGA GATAGCCGCA AACGGAGAGG TATTCATTTT CGCTTCATTC GGTATGCCAG CATACACGCT GAAATCAGCG CTGAGAGCAG CATCTCAAAG CCAAGTTAAA ACAACAGTCG TATTTAGAGG CCTGAAAGAT GAATCTGAAA GCCTGCGTGA TGCCTCCAAC GCCATTCATA GAGCGATAGA TGAAGCAGAT TTAGATGTGA CTCCAAGAGT TATCATCGAC CCTCGTTTGT TTAATACCTA TGCAGTCGAA GTAGCGCCAA CAATGGTGTA TCGCAACGGT GGCAAAGTGG TTACCGCGAC AGGGCTACAG TCATTAGAAG ATTTCGTTAA GCAGTCCGAA GGCTTGTTGC AAAGCGGCTC GCTCGGGAAG TTGTCAGACA CTTACGACAT TACTGAGATG GACATGCTCG AACTTATCCA ACAGAAGCTC AAAAAAGTAG ATTGGGAAGA GAAAAAGCAC GAGGCCGTTA GCCGATTCGT TAACCGTAAA GAGGTTCAGT TGACAGAGAG CCTTAAAGAC GAGGATGTGC GTTACAAAAT TGACCCGCGT GTTCGCTTTA CCCAAGACCA AACAACGCCG GATGGCCAGT ATTTTGCCAA GGCCGGTGAT GTTGTAGATC CTACAGCATT ACTCCAAATG GAAACCCGCT TATTCATGAT TGACCCAACC AGTGAGCGTC AGCTGGCGTG GATGAATGAT GTACTTTCCG TGACAGATCA CAAGCAAGTT TACGTGCTGC TATCAGCTCT GCCAGCGGGT AGCGATTTAA CCGAATTTAA CCGGTTGCAG ACAAAACTAG GCCGTCGCTT GTACTTGATG CAACCGACGA TGGTGTCTCG TTTTCAGCTT GAGCATTTAC CCGCATTAGT TGATTTGTTT AAGGGAGAAA TCCGCGTCAC TGAGATTGGT CAACGAACTC TGAGTAATGC GGGATTACCG ACACTATTAG TAGCTCCAAA TGGCGGTGCC AAATGA
|
Protein sequence | MLTSLSNRQF LVSLFVAVSM SAIYFDAMAT DDNQQFILDA KRQMDDVRSQ IEAMRQNNTQ QPQGGLPAAW GQQSYISQAQ MLTQQADAIR YQVLPKPEPV TPVVQQEIAA NGEVFIFASF GMPAYTLKSA LRAASQSQVK TTVVFRGLKD ESESLRDASN AIHRAIDEAD LDVTPRVIID PRLFNTYAVE VAPTMVYRNG GKVVTATGLQ SLEDFVKQSE GLLQSGSLGK LSDTYDITEM DMLELIQQKL KKVDWEEKKH EAVSRFVNRK EVQLTESLKD EDVRYKIDPR VRFTQDQTTP DGQYFAKAGD VVDPTALLQM ETRLFMIDPT SERQLAWMND VLSVTDHKQV YVLLSALPAG SDLTEFNRLQ TKLGRRLYLM QPTMVSRFQL EHLPALVDLF KGEIRVTEIG QRTLSNAGLP TLLVAPNGGA K
|
| |