| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3954 |
|---|
| Symbol | |
|---|
| ID | 4457704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 4809585 |
|---|
| End bp | 4810934 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639704727 |
|---|
| Product | nickel-dependent hydrogenase, large subunit |
|---|
| Protein accession | YP_848058 |
|---|
| Protein GI | 116751371 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3259] Coenzyme F420-reducing hydrogenase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.644029 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACAAT TGATCAATAT TCAACCCGTT ACCCGCATCG AAGGGCACGC GTCCATCGCC
ATTCAGCTGG ATGACCGGGG TGAAGTCCAG GACAGCAGGG TTCACTTCAT GTCGCTGCGG
GGCTTCGAGA AGTTTGTGGA AGGAAAACCC GCGGAGGAGC TCCCGCGCAT CGTCAACCGG
ATCTGCGGGA TTTGCCCGTG GCAGCATCAC CTGGCTTCCA ACAAGGCCGT CGACCGTTGC
TTCGGGGTGA CGCCGCCCCC CGCCGGCCGA AAGCTCAGGG AGCTCATGCA GGCCATCTCT
CACTCCGAAG ACAAGATTCT GCATTTCTAC TTCCTGGCCG CACCCGACTT CGTCATGGGA
CCGGACAGCG ACTACGGGGT GCGCAACGTC ATCGGGGTGG CGAAGGCACA TCCGGAACTG
GCCGGGCGCG TGGTGCGGAT GCGATATGCA ACCAAGATGA TCCTCGAGAA ATTCGCCGGA
AAGGCCATTC ATCCCCACGC GGGGGTGGTG GGCGGGTTTT CCCGGGTACT CCTGGAGGAA
GACCGCCGGG AATTTCTCGG CAAGATGAAA GAAATGCTGG AGTTCGCGCT TTTCACCATC
GACTTCGCCA AAACCCAGGT GTTCCCGAAA TACCTCGATG CGGTGGCCTC CCTCGGGGTG
ATCAACACCG GCTTCATCGG CACGGTGGAC GACCACGGCG CCCTGAACCT GTACGACGGC
AAAATCCGGC TCATGAAACC CGACGGAAGC TTTGTCGATT TCGACCCGCA GGATTACCTC
GACTATCTCG GAGAACACGT GGAACCCCAT TCCTACGGCA AGTTCCCCTA TGCACGCTGC
TGGAACGAGG GATTTTCCCT GGATCCGCTG CAGCCAAGAG GAATCTATCG CGCCAACACC
CTCGCCCGGA TCAACGTGGC CGACAAAATG GCGACTCCGC GCGCTCAGGC CGAGCTGGAG
GAGTTCCGTG AAAAGTTCGG CCGGCCGGCT CAGTTCACCT TGCTCCACCA CTGGGCGCGC
CTGATCGAAG AGGTGTATGC CTGCGAGCAC GCCATAGAGC TGCTCGAGGA TCCGGAGATC
ACCGATCCCA ACGTGCGCGC CAAAGTCGAA CCCAAAGCGG GACGGGGGGT GGGCTGCCTG
GAAGCTCCCC GCGGCACGCT CATTCACGAC TACACCACCG ACTCCGCGGG GATGGTGACC
AAAGCCAACA TGATCGTCGG CACGACCCAC AACCTTGGAC CCATCAGCCT GAGCGTCAAC
CAGGCGGCGC GCACTCTGAT TCAGAGAGGG GTGGTCGACG AAACCATCCT GAACAAGATC
GAAATGGCGG TGCGCGCCTA CGACCCCTGA
|
|---|
| Protein sequence | MGQLINIQPV TRIEGHASIA IQLDDRGEVQ DSRVHFMSLR GFEKFVEGKP AEELPRIVNR
ICGICPWQHH LASNKAVDRC FGVTPPPAGR KLRELMQAIS HSEDKILHFY FLAAPDFVMG
PDSDYGVRNV IGVAKAHPEL AGRVVRMRYA TKMILEKFAG KAIHPHAGVV GGFSRVLLEE
DRREFLGKMK EMLEFALFTI DFAKTQVFPK YLDAVASLGV INTGFIGTVD DHGALNLYDG
KIRLMKPDGS FVDFDPQDYL DYLGEHVEPH SYGKFPYARC WNEGFSLDPL QPRGIYRANT
LARINVADKM ATPRAQAELE EFREKFGRPA QFTLLHHWAR LIEEVYACEH AIELLEDPEI
TDPNVRAKVE PKAGRGVGCL EAPRGTLIHD YTTDSAGMVT KANMIVGTTH NLGPISLSVN
QAARTLIQRG VVDETILNKI EMAVRAYDP
|
|---|
| |