| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3934 |
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| Symbol | |
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| ID | 4457719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 4793358 |
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| End bp | 4794863 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639704707 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_848038 |
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| Protein GI | 116751351 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.534742 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.477934 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGTCA AGCGCGGCGC CGGCATTTCC GGCAGCCAAA AACCTGAAAG GCCCGAGAAC
AAGTGTTCCT CGTGCGAATT GGAGGATGTC CTCGAAGCCT CTCACGACGG CCTGTTCATC
ACGGACGGCG ACGGCAATGT GTTGATGGTC AACAGCGCAT GGGAGCGGAT CTGCGGCATC
CACCGGGGTT TTGTCATCGG CAAGACCGCC CAGGACATGG TGGGCGAAAA ATTCTACACC
GAATCCGCCG CCATGACGGC CATCAAGGCC GGAAAGAAAA TCACGATCAT GCTCGAGATG
ACCCGGGGAG AGAAAATCGG TCAGAAAATC ATGGCCACCG GGATTCCCAT CTGGGGAACG
GACGGGAGAA TCCGCCGCGT GGTCGTCAAC GTTCGCGACA TCACGGAAAT CATCTACCTT
AAGGATCTCC TGGAGAAAAC CCGCCAATTG AACGAGATCT ACGCCGCGGA GCTCGAGCAG
ATGCGCCTGC AACAGATCAC CAGGGATTGC GACGTCGTCG CCAGGAGCCC GGAAACGAAG
CGGGTCCTGG AAATGGCCGC ACAGGTGGCC AAGGTGGATT CCACCGTGCT GATCACCGGG
GAGTCCGGAT GCGGCAAGGA GGTAGTCGCC AATGCGATTC ACCGGCTCAG CGAGCGCAAC
GAAGGTCCGC TCATCAAGAT CAACTGCGGC GCCATTCCCG AAAACCTGCT GGAATCGGAA
CTGTTCGGAT ACGAGGCGGG AGCATTCACT GGAGCCAAGA AACAGGGCAA GCCGGGCATG
TTCGAACTGG CGGAAAAAGG GACCCTTTTC CTCGACGAAG TGGGCGACCT GTCCGTCAAT
CTCCAGGTGA AGCTGCTGCG GGTTTTGCAG GATCACGAGG TCGTCCGGGT GGGCGGTATC
AAGTCCATTC CGGTCGACTC CCGCATCGTG GCGGCAACCA ACCGCAACCT GCGCGAAATG
GTCTCGTCCG GGGCCTTCCG CGAAGATCTC TACTACCGGT TGAACGTGGT TTCCATCGAG
ATCCCGCCCC TGCGCGAGCG CAGGGAAGAC ATCCCGCTGC TCGTCCAGTA TTTTCTGGAA
AGAATCAACA AACGCTACCA GTTCAACAAG CGCTTCTCCC CGGCGGTGGT GGACCGGTTT
CTCTCCTATT CCTGGCCGGG AAACATCCGC GAGCTGGAAA ACGTTATCGA ACGCATGCTG
GTGATGACCG AAGACGAGGA AATCCATTCC CGCCATCTGC CGGCCTGCAT GCAGGGTCCC
ATGCCGCCCG ACGCGGGCCG CCTGGTTCTG CCGCACGACG TTTCACTGCA GCGGGCCGTC
GAGCAAATCG AGAGACAGCT GCTCGAAGAG GCGCTCAGAA AATACGGCAG CACACGTAAA
GCCGCCGTGG CCCTGGATAT CGACCAGTCC ACCGTCGTGC GCAAGATGAA AAAATACCGG
ATCCCGTCTC CACTCGAGAC GCAATCCTCT CCCGGCCTGT TCGACGACCC ACGGCTGAAG
GTTTGA
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| Protein sequence | MLVKRGAGIS GSQKPERPEN KCSSCELEDV LEASHDGLFI TDGDGNVLMV NSAWERICGI
HRGFVIGKTA QDMVGEKFYT ESAAMTAIKA GKKITIMLEM TRGEKIGQKI MATGIPIWGT
DGRIRRVVVN VRDITEIIYL KDLLEKTRQL NEIYAAELEQ MRLQQITRDC DVVARSPETK
RVLEMAAQVA KVDSTVLITG ESGCGKEVVA NAIHRLSERN EGPLIKINCG AIPENLLESE
LFGYEAGAFT GAKKQGKPGM FELAEKGTLF LDEVGDLSVN LQVKLLRVLQ DHEVVRVGGI
KSIPVDSRIV AATNRNLREM VSSGAFREDL YYRLNVVSIE IPPLRERRED IPLLVQYFLE
RINKRYQFNK RFSPAVVDRF LSYSWPGNIR ELENVIERML VMTEDEEIHS RHLPACMQGP
MPPDAGRLVL PHDVSLQRAV EQIERQLLEE ALRKYGSTRK AAVALDIDQS TVVRKMKKYR
IPSPLETQSS PGLFDDPRLK V
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