| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3680 |
|---|
| Symbol | |
|---|
| ID | 4458002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 4492460 |
|---|
| End bp | 4493677 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639704453 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_847785 |
|---|
| Protein GI | 116751098 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATGA ACAAGACCGT TGGCGAATCG CTCAAACTGA TCGTGTTTTT GATGATTCTT
TCGGGAGGCC TTTTGACCGG CGGCTGCGGC CGCGGGAAGT CATCCGCTCC ACCGCCCGCG
GTGCCGGAAG TGTCCGTGGT GGCGGTTCAA CCGGAGCAGG TGGTGCTCAC CGTCGAGTTG
CCGGGGCGCA CGGCCCCCCA CCTTGTCGCG GAGATCCGGC CCCAGGTCAA TGGGATCATT
CAGAAGCGCC TGTTCAAGGA GGGTTCCGAC GTCAAGGCCG GCCAGGTGCT CTACCAGATC
GATCCCGCTT CTTTCCAGGC CGCGCTCGAC AATGCAAAGG CATCTCTGGC CAGGGCGGAG
GCGAATCGAC CGGCAATCAG GTTGAGGGTC GAGCGCTACA AGGAGTTGCT CGCCGACAAG
GCGGTGAGCC GGCAGGACCA CGATGACGCG GTCGCCTCCC TGAAACAGGC CGATGCGGAA
GTCGAGCTCT GGAAGGCGGC GGTGGAATCC GCCCGGATCA ATCTTGGGTA CACGCGCGTC
ATGGCACCCA TCTCCGGGCG AATCGGCAGA TCCAACGTGA CCGACGGGGC CCTGGTCACG
GCACACCAGG CCACACCCCT GGCAACCATT CAACAGTTGG ACCCCATCTT CGTGGATGTT
CCGCAGTCGA CGACCGAATT GCTGCGGCTG AGGCGCCGAT GGGAAGACGG CCGCCTGAAC
CCGAACGGGA CGAACCAGAA GAAGGTGAAA CTCCTGCTGG AAGACGGTAC GCCCTATCCT
CCGGAAGGGA CACTCCAGTT TCGCGAGGTC ACGGTGGACC CGACCACCGG GTCCGTCATT
TTGCGGGCCG TCTTTCCGAA CCCCGAAGGA GTTCTCCTCC CGGGCATGTA TGTTCGCGCG
GTCGTGCAGG AGGGCATCCA CGAGCAGGCT ATCCTGATAC CCCAGCAGAC GGTGATGCGC
GATCCCAAAG GGAACCCTTC CGTCATGATC GTGGATGCCG AAGGAAAGGT CCAGCAGCGG
CCGCTCACGC TCGAGCGCGC CATCGGCGAC AAGTGGCTCG TTTCGGCGGG ACTGGCCTCG
GGCGAACGTG TGATCGTCGA AGGGATCCAG AAGGTCCGGC CCGGTGCTTC CGTGAAAGTT
GTGTCCGCCG AAGGCGATGG TCAGCAGGGT GTCGCCGTCC GCGGGAACGC ATCACAACCC
GCCGTGAAAC TGAACTGA
|
|---|
| Protein sequence | MQMNKTVGES LKLIVFLMIL SGGLLTGGCG RGKSSAPPPA VPEVSVVAVQ PEQVVLTVEL
PGRTAPHLVA EIRPQVNGII QKRLFKEGSD VKAGQVLYQI DPASFQAALD NAKASLARAE
ANRPAIRLRV ERYKELLADK AVSRQDHDDA VASLKQADAE VELWKAAVES ARINLGYTRV
MAPISGRIGR SNVTDGALVT AHQATPLATI QQLDPIFVDV PQSTTELLRL RRRWEDGRLN
PNGTNQKKVK LLLEDGTPYP PEGTLQFREV TVDPTTGSVI LRAVFPNPEG VLLPGMYVRA
VVQEGIHEQA ILIPQQTVMR DPKGNPSVMI VDAEGKVQQR PLTLERAIGD KWLVSAGLAS
GERVIVEGIQ KVRPGASVKV VSAEGDGQQG VAVRGNASQP AVKLN
|
|---|
| |