Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_3666 |
Symbol | |
ID | 4458023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 4474344 |
End bp | 4476044 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639704439 |
Product | type II secretion system protein E |
Protein accession | YP_847771 |
Protein GI | 116751084 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGAGT CTTCTTCATT GCTCAGTGCT TTCCGGCGGG AGTTCAACCT GCAGGAGGAG CAGGTCTGTC AGTTGCGCGA TGCCTATTTC ATGGAGGGAT TGCCTCTTGC GGACGCCTTC GAGCAGATTT CGGTGACCGA TGAGAACCGC ATCCTCCGCG TTCTGTCCCA GCATTTCGGG ATCCCGCTGC TGGAGCGTGA AGATTACCCG GAGAAACCAG TGCTCCTCGA GGGCGTTTCC ATGGTTTTTC TGCGCAAGCA CGCCGTCCTC CCCATCCAGA TCGAAAGCGG CAAGGTGAAG GTAGTGGTCA ACAATCCCTT GAACCTGCCG GTGCTGAACC TCCTGGGCGG TTACTTCGCC GACATGAAAC TCAGTCTGTG CCTTGGGCAG CGGGAGGAGA TCCGAACGGC CATCGACCGG CTGTACGGGA CCGCGGCAAG GGAGGCCGAA GAACAGTCCC GCTCCGGTGA AGGAGCGGTG CTCAACGGCA GCGCTTTCGA GGAGGATCTC GAGCACCTGA GGGGATTGGC CCAGGAAGCG CCTATCGTGA GGCTCGTCAA CGTCCTGATC TCGCGCGCGC TCGACATGCG GGCATCCGAC ATTCATTTCG AGCCGTTCGA GCGCAGTTTC CAGGTCCGAT GCAGAGTCGA CGGTGTGCTC TTCGACCTCG ATCAACCTCA GAAGAGCATG CAGGCGGCGA TCGTCAGCCG CCTCAAACTG ATGGCCAACC TCAACATCGC TGAACGCAGG CTGCCCCAGG ACGGCAAGAT CAAGCTCAAG TTCGGCAACC GCGAGGTCGA CATCCGCGTT TCGACCGTTC CGACCATATA CGGAGAGAGT ATCGTCCTCC GGCTCCTGGC TCAGGAGGGG GTCGAATACA ATCTGGCCAA CCTGGGCATG GACGGGGAGG ACCTCGCCTA CCTGGAACAG CTTGTCGAAC GGCCTTTCGG TATGATCCTC GTCACCGGCC CGACCGGTTC CGGCAAGACG ACCACCCTTT ACGGGGTCCT CAAAAAACTG AATTCCGTGG TGAGAAAAAT CATCACGGTC GAGGATCCCG TCGAATACCA GATCAACGGC ATCAACCAGA TCCAGGTCAA GCCTCAGATA AACCTCACCT TCGCCAACGC GCTCAGGTCT CTTGTCCGGC AAGACCCGGA CGTGCTTCTG ATCGGAGAAA TCCGGGACAA GGAAACGGCC GACATCGCCA TCGAATCGGC TCTCACCGGT CACCTGGTGT TGTCGACCCT TCACACGAAC GACGCGCCGG GCGCCATCAC ACGGCTCCGG GACATCGGGA TCGAGTCTTT TCTGATGGCC GACTCCCTTC TGACGGTTCT CGCCCAGCGC CTGGTGCGTG TGCTCTGCCC TCATTGCAAG GAACCTTACA CTGCGCGCGA AGCCGATTGG AACCGTCTCA ACGAGATCAT TCCCGACCTG CCTCGCTCCC TTACGCTTTG CCAGAACAAG GGCTGCGATC GATGCGGCTA CACCGGATTC AGGGGCAGAC AGGGAATCTT CGAGGTGCTC AAGGTGAATG AGAGCGTCCG ATCGGCGATC GTCGCCGGGA AGGATGCCGG GAGCATTGCC CCGATCGCCT TCGAATCGGG CTACCGACCG CTTTTGCACC ATGGCTATCG GAAGGTGATC GAAGGCATTA CGACGCTCTC GGAGGTGCTG AGGGTGACAA GCCTGTCATG A
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Protein sequence | MSESSSLLSA FRREFNLQEE QVCQLRDAYF MEGLPLADAF EQISVTDENR ILRVLSQHFG IPLLEREDYP EKPVLLEGVS MVFLRKHAVL PIQIESGKVK VVVNNPLNLP VLNLLGGYFA DMKLSLCLGQ REEIRTAIDR LYGTAAREAE EQSRSGEGAV LNGSAFEEDL EHLRGLAQEA PIVRLVNVLI SRALDMRASD IHFEPFERSF QVRCRVDGVL FDLDQPQKSM QAAIVSRLKL MANLNIAERR LPQDGKIKLK FGNREVDIRV STVPTIYGES IVLRLLAQEG VEYNLANLGM DGEDLAYLEQ LVERPFGMIL VTGPTGSGKT TTLYGVLKKL NSVVRKIITV EDPVEYQING INQIQVKPQI NLTFANALRS LVRQDPDVLL IGEIRDKETA DIAIESALTG HLVLSTLHTN DAPGAITRLR DIGIESFLMA DSLLTVLAQR LVRVLCPHCK EPYTAREADW NRLNEIIPDL PRSLTLCQNK GCDRCGYTGF RGRQGIFEVL KVNESVRSAI VAGKDAGSIA PIAFESGYRP LLHHGYRKVI EGITTLSEVL RVTSLS
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