| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3658 |
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| Symbol | |
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| ID | 4458015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 4465504 |
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| End bp | 4467885 |
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| Gene Length | 2382 bp |
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| Protein Length | 793 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639704431 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_847763 |
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| Protein GI | 116751076 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATAT GCCGGGCCAT AGGGGTTGTT TTGATGGCCT CTGTCCTGTT GTCCTGCGGT
ACGGCGGGCA CTCCGCCTCC ACGGGCGCCG CGCACCGTCT GGGGAGCAGT CCCCGAGCAG
AAAGCGAAGT CACCCGCCGA GGTCCTGAGT CCCGTCGCCC TGGATTCACC CAAAGAGAAG
CAGGTGTCGC TGGACGATCC GAAGAAAGAC TCCGATGCAG CCAAGAAAAA GCCCGTCCTC
CCGCGCCACG AGGGGAAGAC GACCTCCGGC CTGCTCACCC CGCCCGCCGG GGGAAAAGGA
GAGAGAGTTC CAGTCGGGGA AGGCGAACGT CAGAAGGTCG TCTTCAATTT CGACAAGGCC
GACCTGGGAG AGGTCACAAG CCAGGTATTC GGCGATTACC TCAAGCTCAA CTATGTGCTG
GACCCCACTC TTCAAGGCCG GATCAGCATG TACCTGGAGG GCGAGTTCAA CAGGACCGAG
CTGCTCCAGA TGATCATCAA AGCTTTCGAG GCAAACAACG TTTCGATCAC CCCCCAGAAG
GGACTCTACT ATATTCAGCC CTTGCAGCGC AGCGCCAGCA GCAGCCTGTC CCTCGCCGAC
ACCATCACGT TGAAGCCGGA CAAGGACGGG GTGAGACCCG TCATCGTCAT CTACAAACTG
CGCTACCTGG ACGTCAAACA GGCGCTCAAC ACCGTAAAAT CCTTCATCAC CCCCGGGCGG
CCCCTCATTT CGGACACCAT GTCCAACAGC CTCATCTTCG TCGAGAGCAG CGACAATGCC
CACTCCATCG TTGAAGTCCT CAGAACGATG GATATGAACA TCCTTCAGGA AGTGAGCATG
GAGGTCGTTC AGCTGCAATC CATCGCTCCG CAGGACGCCG TCCAGGGGAT GGACGCCCTT
ATGGGCAAAC TGGGCCTCTT CAAGGAGACG AACCTCAAGA ACAATCTCGC GTTCATCCCC
CTGGTGAATT TCCGCGGCGT GCTGGTCCTG GCCCAGACAC CCGAGTTGCT CAAGACCGCC
AGGCAATGGA TCAACGCCCT GGACACCCAT GGCGGCGAAG TGGGAGAGCA GATCTACGTC
TACTACGTCC AAAACGGGCT GGCCAAGGAC ATCGGAGACA TTTTGCTGCA GGTGTACGGA
ATCGCGGCAC CCGAAAGGCG ACCGGAAAAA CAGGTCGTCC AATCGACCAC CGGGAGGAGA
ACCTTCGGCA GCGGCTCGTC TTTCGGAGGT GGGTCGACTT CCTCGGGTTT CGGCACCTCG
TCGAGCGGTT CGTCCTTTGG CAGCTCATCG AGCAGTCGAT TCCGCTCGGC GTCCTCGGAC
TCATCCGGCC AGTATGGGGG GACCGGCTCG GCGTTCGGAC AAACCACTGG CAGCGGGGCT
TCGGCTCAGC GCGCGGCGCG CAGCGCCGCG GGCCGCGCGG GAGGACAGAG TCCGCCGACA
TCGGTGTCCC CCGAAGTGAT GATCATCCCC GATGAGGTCA ACAATGCCAT AGTGGTCCGT
GCAAACGCCA CCGACTACGC CAAGATAAAG AAGACCATCG AAGCGCTGGA TATCCTGCCC
CGCGCCGTCC TGATCGAGGT CATCATTGCC GAGGTCGCGC TGACCAAGGA TTTCGAGTAC
GGGCTGAAAT GGTACTTCAG CCATGCGGAA GTCGGAGCCG GCGTCGGGCA AGGCTCCCTC
AACGGACTGG GAGGCGTGTC CGACATTGCT CTCAACCTGG CCGGCATATC CTCCGCGGGC
GGCATGGCAC TGGCCTGGGT CAGCAATGCC AAAGACATGG CGGGGGTCTT GAGCTGGCTG
TCCTCGAAAA CCAAAGTGAA GATTCTCTCC ACGCCCACCC TGCTGGCAAC CGACAACAAG
GAAGCCGCCA TCCAGGTGGG TGGACGGACG CCCGTACCGA GCGGGTCCTA CACCGGGGGG
ACCTCGACCA CCCTCGACAC TGTGTTCAGC ACCATCGAAT ACGAGGAAAC CGGCACCATA
CTTACCGTTA CACCTCACAT CAACGCCGGA GGCCTGGTCC GCCTGGAAGT GGAACAGACC
ATCCGCCGGG TCGGCGCCAA TGCCACCGTC GGGGTCAACA ACACCGCGCC CACCTTCACC
GAGCGAAACC TGAAGACGAC GCTGCTGGCC CAGGACGGCT CCACCGTGGT CATCGGCGGC
ATAATCGACG AAATCGACCG GGACACCACC ACCGGCGCGC CGATGCTGGT CGATGTTCCC
ATTATCGGCC CGCTTTTTGG GCAGAAGGGC AAAAGCAGGG AACGCACGGA ACTGCTCATT
GCGATCACGC CGCGGGTCGT CGAAAGACGC GGGAGTGATT CTCTGCGGGA ATTCGTGGGC
AAGATGAGAG ATCTAAGGCA GCTTATCCAT CCCAACCCCT GA
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| Protein sequence | MKICRAIGVV LMASVLLSCG TAGTPPPRAP RTVWGAVPEQ KAKSPAEVLS PVALDSPKEK
QVSLDDPKKD SDAAKKKPVL PRHEGKTTSG LLTPPAGGKG ERVPVGEGER QKVVFNFDKA
DLGEVTSQVF GDYLKLNYVL DPTLQGRISM YLEGEFNRTE LLQMIIKAFE ANNVSITPQK
GLYYIQPLQR SASSSLSLAD TITLKPDKDG VRPVIVIYKL RYLDVKQALN TVKSFITPGR
PLISDTMSNS LIFVESSDNA HSIVEVLRTM DMNILQEVSM EVVQLQSIAP QDAVQGMDAL
MGKLGLFKET NLKNNLAFIP LVNFRGVLVL AQTPELLKTA RQWINALDTH GGEVGEQIYV
YYVQNGLAKD IGDILLQVYG IAAPERRPEK QVVQSTTGRR TFGSGSSFGG GSTSSGFGTS
SSGSSFGSSS SSRFRSASSD SSGQYGGTGS AFGQTTGSGA SAQRAARSAA GRAGGQSPPT
SVSPEVMIIP DEVNNAIVVR ANATDYAKIK KTIEALDILP RAVLIEVIIA EVALTKDFEY
GLKWYFSHAE VGAGVGQGSL NGLGGVSDIA LNLAGISSAG GMALAWVSNA KDMAGVLSWL
SSKTKVKILS TPTLLATDNK EAAIQVGGRT PVPSGSYTGG TSTTLDTVFS TIEYEETGTI
LTVTPHINAG GLVRLEVEQT IRRVGANATV GVNNTAPTFT ERNLKTTLLA QDGSTVVIGG
IIDEIDRDTT TGAPMLVDVP IIGPLFGQKG KSRERTELLI AITPRVVERR GSDSLREFVG
KMRDLRQLIH PNP
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