Gene Sfum_3500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3500 
Symbol 
ID4458202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4278691 
End bp4279494 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content62% 
IMG OID639704272 
ProductHAD family hydrolase 
Protein accessionYP_847606 
Protein GI116750919 
COG category[R] General function prediction only 
COG ID[COG0561] Predicted hydrolases of the HAD superfamily 
TIGRFAM ID[TIGR01484] HAD-superfamily hydrolase, subfamily IIB 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.126173 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGCAT CGATCCGTGC CATCGACGTC GAGACTGCGA GGAACCTCAA GGGGATATTC 
TTCGACATCG ACGACACTTT CACCACAAAC GGGAAGATCC CGGCGGTCGC CTACCAGGGG
CTGTGGACTT TGAAGGAATC CGGCCTGAAA GTCGTTCCCA TCACCGGAAG GCCGGCGGGC
TGGTGCGATC ATATCGCCCG CATGTGGCCC GTGGACGCCG TCGTGGGGGA AAACGGGGCT
TTCTATTTCC GGTTCGACGA GCGGGCGGGA AAGCTCACAA AACGCTTCCT GGACCCGGCC
CCGGTCCGCT GCGAAAAGCG AGTCCTGCTG CAGGCCGTCG AAAAGGATGT CCTCAGCTCG
GTGCCCGGCA CGGCTCTCGC CTCCGATCAG CCATACCGGG AGACCGATCT TGCCATCGAT
TTCCGTGAAG ACGTGGAGCC TCTGGGCTGG CCGGCGGTCG AGCGCATCTG CGCCGTCTTC
CGAAAGCACG GCGCGACCTG CAAGGTCTCC TCGATCCACG TGAACGGCTG GTTCGGAGAT
TACAACAAGC TCCACATGAC GCGAATCATG GCCAACGAGC TCTGGGGCGT CGACCTTGAG
GCGGACCGGC GCTTTTACCT GTTTTGCGGA GATTCTCCCA ACGATGAACC GATGTTCGAA
TTCTTCCCGC ACAGCGCGGG GGTTCGCAAC GTGCTTCAAT TCGCCGACCG GATGAGCCGG
CTGCCGGCGT TCGTGGCGGA TCGCGAAGGC GGCGCGGGAT TCGCGGAAAT CGCCGAAACC
GTTCTCTCTC TCAGGGCGAC CTGA
 
Protein sequence
MIASIRAIDV ETARNLKGIF FDIDDTFTTN GKIPAVAYQG LWTLKESGLK VVPITGRPAG 
WCDHIARMWP VDAVVGENGA FYFRFDERAG KLTKRFLDPA PVRCEKRVLL QAVEKDVLSS
VPGTALASDQ PYRETDLAID FREDVEPLGW PAVERICAVF RKHGATCKVS SIHVNGWFGD
YNKLHMTRIM ANELWGVDLE ADRRFYLFCG DSPNDEPMFE FFPHSAGVRN VLQFADRMSR
LPAFVADREG GAGFAEIAET VLSLRAT