| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3398 |
|---|
| Symbol | |
|---|
| ID | 4458304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 4164951 |
|---|
| End bp | 4165958 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639704170 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_847506 |
|---|
| Protein GI | 116750819 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0288037 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAAAAC TAAAGAACTT CTTCGACTTC AGGGATCTCC CCCGCCTCGA CCTGGGCATC
GCCGCGGCGG TTGGACTCGC CTTGCTGGTT TTTCCGTTCT TCCCGTTTTC CTCTTTCGCC
ATGTCCACGG TGATCCAGTT TCTGATGTTC TCCCTGTACG GCATGGGCTG GAACACGATC
GGGGGCTACG GGGGCCAGGT GGACCTGGGT CTGGCCCAGT ACCTCGGGAT TGGCGCCTAT
GCCACCGCCG TCTCCATGAT CCGCTGGAAC ACGCCGTTCT GGGTGTCCAT GCCCGTCGGG
GTCCTCATCG CGATCGCCTG GTGTTCCGTC ATCGGTTACT CGGTTTTCCG GCTGAAAGGC
CACTATTTTG CCATTGCCAC CATCGCGACG TCTCTGGTGC TCAAGGACAT CTTCGAGGTG
TGGCGCTTCG TGGGCGCGGC GCGCGGCCTC GAAATTCCCG CCACGCGATT CTCTTCGCCC
GATTTCCTGC ACCTTTTCTT CACACAGGAC GACACCTATT ATTACATCAT TCTGGCCTTC
TTCTTTATCG GCATCCTTTA CGTCAACTGG TTCCGGAAAT CGCGTCTCGG GTTTCAACTT
CGTTCCATAA AGGACAACGA AGAGGTGGCC CGGTCGCTCG GGATCAACGT GCAGTGGGCC
AAGATCAAGA CGTACGCCGT TGCCGTCACG TTCGTCAGCG CGGTGGGCTC GTTTCACGCG
TGTTACGTCA AGAATATCGA GCCGGAAGAC ACCATGAGCC TCGACATTTC GATCCTGATC
GCGCTCATGG CCATGCTCGG CGGGGCCGGT TCCCTCTGGG GCCCCCTCAT CGGTGCGGGC
ATCCTGATCC CGCTCAAAAG CTACCTGAAA GAATGGCTCG GTGCGCGCGC CGGGCTGGTC
GGAATCGATC TGGTCATCTA CGGGGCCATC ATCATGTTCA TCTCGGCGGT GGAACCCCGG
GGAGTCTGGG GTATCGTGGA AAGAATAAGG CGGAGGAAGC GGGCGTGA
|
|---|
| Protein sequence | MEKLKNFFDF RDLPRLDLGI AAAVGLALLV FPFFPFSSFA MSTVIQFLMF SLYGMGWNTI
GGYGGQVDLG LAQYLGIGAY ATAVSMIRWN TPFWVSMPVG VLIAIAWCSV IGYSVFRLKG
HYFAIATIAT SLVLKDIFEV WRFVGAARGL EIPATRFSSP DFLHLFFTQD DTYYYIILAF
FFIGILYVNW FRKSRLGFQL RSIKDNEEVA RSLGINVQWA KIKTYAVAVT FVSAVGSFHA
CYVKNIEPED TMSLDISILI ALMAMLGGAG SLWGPLIGAG ILIPLKSYLK EWLGARAGLV
GIDLVIYGAI IMFISAVEPR GVWGIVERIR RRKRA
|
|---|
| |