Gene Sfum_3023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3023 
Symbol 
ID4458643 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3726731 
End bp3728416 
Gene Length1686 bp 
Protein Length561 aa 
Translation table11 
GC content61% 
IMG OID639703795 
Productacetolactate synthase, large subunit, biosynthetic type 
Protein accessionYP_847132 
Protein GI116750445 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 
TIGRFAM ID[TIGR00118] acetolactate synthase, large subunit, biosynthetic type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000478309 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.133355 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAGGTA TGGTTTTGGA GATCACCGTT GCAGAAGCGT TGATAAAGTG CCTCGAAAAG 
GAAAACGTGG AGGTGGTGTT CGGCTATCCG GGAGGGGCGA TCCTGCCGGT CTACGATGCT
TTGTACCATT CTTCGCGTAT CAGGCACGTG CTGGTGAGGC ACGAGCAGGG AGCGGTGCAC
GCCGCTGACG GATACGCAAG GGTCACCGGC CGGGTGGGGG TTTGCGTGGC CACCTCGGGG
CCGGGGGCCA CCAACCTGGT CACCGGGATT GCCAACGCGT ACATGGATTC CATACCCCTT
GTGGTTTTCA CCGGCCAGGT TCCCACCAGT CAAATCGGCA CGGACGCCTT TCAGGAGGTG
GACATATTCG GCATCACCAT GCCGGTCACC AAGCACAACT ACCTGGTAAA GGATCCCCAG
AGGCTGCCGG CCATCGTGAA GAACGCTTTC CATATCGCCT CCACGGGACG TCCGGGTCCG
GTGCTGGTCG ATTTGCCCAA AGACGTGGCG CAGAGCGTGA TTTCGTTCAA GTACCCGGGC
ACGGTGCGGC TGCGCGGGTA CAAGCCGACG TACCGCGGGC ACCCCGCGAA GATCGGTGAG
ATCGCGGAAC TGATCCGCAA ATCCAAACGA CCGGTGATTT ACGCCGGGGG TGGGATCGTC
ACCTCGGATG CGGCCGGGGA GCTGCTCCAG CTGGCGGAGA CCATTTCCGC TCCGGTGACC
AACACTTTCA TGGGACTGGC CGGTTTTCCC GGGGACCACC CGCTCTTTCT CGGAATGCTC
GGCTTGCACG GGACGCGTTA CGCGAATCTG GCCATCACCG AATGCGACCT GCTGATCGGC
CTCGGAGCGC GGTTTGACGA CCGCGTCACC ATGAACATCA ATGCCTTCGC CCCTCAGGCT
ACGGTCATTC ACATCGACAT CGACCCTGCC GAGATCGGCA AGATCGTCAA CGTGCACGTG
CCCCTGGTGG GAGACGTGAA GACGGTGCTC CAGTCGCTTT TGCCGCAGCT GGAAAAGACG
GATCGCTCGG CCTGGCTGGC CCGCATACGG GAGCTCAAGG AGCAGCATCC CCTTTCGTAC
AGCCGGGAAG GCGGCCTGAA ACCCCAGTTC ATCATCGAAC AGCTGTGGGC CTGCACGCGG
GGGAACGCTA TTGTGGCCAC GGACGTCGGC CAGCACCAGA TGTGGGTGGC TCAGTACTAC
CGTTTCAAGT CCCCCCGCAC GCTGATTTCC TCGGGGGGAC TGGGGTGCAT GGGGTTCGGC
CTTCCCGCGG CCATCGGCGC GAGCATTGGT CGGCCGAACG CGAAGGTTGT GCTGGTGACC
GGCGACGGCA GTATCCAGAT GACCATGCAG GAGTTGGGCA CCATGATCGA ACAGGGTGTG
CCGGCCAAGA TCATCATCCT GAACAACCAT GCCCTCGGCA TGGTGCGGCA GTTGCAAGAG
TTTTACTGCG AAGGCCGTTA CATGTCGGTC AATTTCCGGT TCCACCCGGA TTTTGAAACG
TTGGCCAAAG CCTATGGAAT TCCCGGGCAC ACGCTGCGAA CGGAAGAGGA GGTGACTTCC
CGGCTTCCGG GGATAATTGA GGCCCCCGGA GCGGCCATTG TCAACTGCCT GGTCGCAGCC
GAAGAAAACG TATCGCCCAT GGTACTTGCC GGAAAAGGGA TCCACGAGGC GATCGACTGC
TCCTGA
 
Protein sequence
MGGMVLEITV AEALIKCLEK ENVEVVFGYP GGAILPVYDA LYHSSRIRHV LVRHEQGAVH 
AADGYARVTG RVGVCVATSG PGATNLVTGI ANAYMDSIPL VVFTGQVPTS QIGTDAFQEV
DIFGITMPVT KHNYLVKDPQ RLPAIVKNAF HIASTGRPGP VLVDLPKDVA QSVISFKYPG
TVRLRGYKPT YRGHPAKIGE IAELIRKSKR PVIYAGGGIV TSDAAGELLQ LAETISAPVT
NTFMGLAGFP GDHPLFLGML GLHGTRYANL AITECDLLIG LGARFDDRVT MNINAFAPQA
TVIHIDIDPA EIGKIVNVHV PLVGDVKTVL QSLLPQLEKT DRSAWLARIR ELKEQHPLSY
SREGGLKPQF IIEQLWACTR GNAIVATDVG QHQMWVAQYY RFKSPRTLIS SGGLGCMGFG
LPAAIGASIG RPNAKVVLVT GDGSIQMTMQ ELGTMIEQGV PAKIIILNNH ALGMVRQLQE
FYCEGRYMSV NFRFHPDFET LAKAYGIPGH TLRTEEEVTS RLPGIIEAPG AAIVNCLVAA
EENVSPMVLA GKGIHEAIDC S