| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2616 |
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| Symbol | |
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| ID | 4459055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 3228026 |
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| End bp | 3229759 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639703387 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_846729 |
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| Protein GI | 116750042 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0639798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.935147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTGC AGGACAGACA GGTCCTCAAG AATCTTCTTC CTTTGATCCG ACCGCATCGG
CGAAAACTGG TCTTTGCCGT GCTGTGCATG ATCGTGTGTT CGGGTTCCAC GGCTCTGACC
GCCTACCTGA TCAAGCCGGC CATGGACGAG ATCTTCGTGC GCAAGGACAT CGCCATGCTC
TGGATCATCC CCCCGGCATT CCTGGCGGTA TCCCTGGTGA ACGCACTGTC GAAGTGGGGC
AACGACTATT TCCTCAAGTC CGTGGGACTT TCGGTCATCG CAAACCTGCG CGAGAAGCTC
TACAATCACA TCCAGGAACT GCCCCTTTCC TTTTTCGACC GAGCCTCGAC GGGCGTTCTC
ATGAGCCGCA TCACCAGCGA CGTCAACGAG ATCGAGCATA CCGTCACCAC GGTTTTCACG
GGGCTCATCC TGGACGGCTG CAGCGTGATC GCGCTCGCCT GCGTGGTCTT TTACCAGGAC
TGGAAACTGG CCCTGATCGC CATCCTGGTT TTGCCCGTGG CATTCTATCC CGTTTTCCTG
TTCGGCTCCC GGCTCCGCAG GTTCGCCGTC AGGCGGCAGG AGACCATGGG CAGTCTCAAC
GTCGTTCTCC ACGAAAGCTT CAGTGGAGCG CGCATCGTGA AGGCGTTCGG CATGGAGAAT
CATGAGAAGA AGCGATTCGC CGAACAGAAC CGCAGGTTCC TGCACTATCA ACTGAAGTCG
GAATGGATCG ACGCGCTCTC CACTCCCCTC ATGGAGTTCA TCGGGTCCAT CGGCGTGGCC
GCGGTGATCG CCTACGGCGG GTACCAGGTG GTGCAGGGGC TCTCGACGCC GGGCACCTTT
TTTTCCTTCA TGGCCGCTGT GCTGATGCTC TACCGCCCGA TCAAGGATTT GAGCAGGATC
AACAGCGTGC TGCAACGGGG CGTGGCATCG ACCACGAGGG TTTATGCCAT CCTCAACGAG
CGCAATTCCC TGGTGGAAAA GCCGGACGCC CCGGACCTCC CTCCCATCAG CCGGGAAATC
GAATTTCGCC GCGTCTCTTT CGCCTATGAC GAAAAACCGG TGCTCCATGA CATCGATTTG
AAGGTTCGGG CCGGAGAAGT CATCGCCCTG GTGGGCAGCA GCGGCGGGGG AAAGACCACG
CTGGCAAATC TTGTGCCCCG CTTCTACGAC GTGTCCGCGG GGGCGATACT GGTTGACGGC
ATGGATATTC GCGACGTGCG CATCAGGTCC CTGCGCGGCC AGATCGCCAT CGTCACGCAG
CAGAGCTTTC TGTTCAACGA CACCGTGCGC AACAACATCG CTTACGGGGA CATCGGCAGG
CCCGAGCGGG ACATCGTCGA TGCGGCCCGG GCGGCCCATG CCTACGATTT CATCCGGGAA
CTGCCCCAAG GCTTCGACAC GATCATCGGG GAACAGGGAG TCATGCTCTC GGGGGGGCAG
CGTCAGCGCA TCTGCATCGC CCGAGCGCTC CTCAAGAATG CCCCCATTCT CATCCTGGAT
GAAGCCACCT CATCGCTCGA CAGCGAGTCG GAGCTCGAAG TGCAGCAGGC TCTCGACAAC
CTGCTGCGGG GGCGCACGAC CTTCGTCATC GCCCACCGGT TTTCGACCAT CCAGTCGGCC
GACCGCATCC TGGTCGTCGC GGACGGGAAG ATCGTGGAAG AGGGCACGCA CGCTGACCTC
ATGGCCCGAT CGGGCGAATA CCGACGGTTG TACGACATCC AGTTTCAGAA ATAG
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| Protein sequence | MNLQDRQVLK NLLPLIRPHR RKLVFAVLCM IVCSGSTALT AYLIKPAMDE IFVRKDIAML
WIIPPAFLAV SLVNALSKWG NDYFLKSVGL SVIANLREKL YNHIQELPLS FFDRASTGVL
MSRITSDVNE IEHTVTTVFT GLILDGCSVI ALACVVFYQD WKLALIAILV LPVAFYPVFL
FGSRLRRFAV RRQETMGSLN VVLHESFSGA RIVKAFGMEN HEKKRFAEQN RRFLHYQLKS
EWIDALSTPL MEFIGSIGVA AVIAYGGYQV VQGLSTPGTF FSFMAAVLML YRPIKDLSRI
NSVLQRGVAS TTRVYAILNE RNSLVEKPDA PDLPPISREI EFRRVSFAYD EKPVLHDIDL
KVRAGEVIAL VGSSGGGKTT LANLVPRFYD VSAGAILVDG MDIRDVRIRS LRGQIAIVTQ
QSFLFNDTVR NNIAYGDIGR PERDIVDAAR AAHAYDFIRE LPQGFDTIIG EQGVMLSGGQ
RQRICIARAL LKNAPILILD EATSSLDSES ELEVQQALDN LLRGRTTFVI AHRFSTIQSA
DRILVVADGK IVEEGTHADL MARSGEYRRL YDIQFQK
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