| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2001 |
|---|
| Symbol | |
|---|
| ID | 4459702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 2451147 |
|---|
| End bp | 2452094 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639702767 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_846119 |
|---|
| Protein GI | 116749432 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00115846 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAGG GAGCAGCCGT CATACCCAGG AGGGGGTACC TCTACGTCAT CGCAGCCGCC
CTGCTTTGGG CGGTTTCCGG TGTTTCGGGC AAGTTCCTGT TTCAGAGGGG GGTTACCCCC
ATGGAGCTCG TGCAGCTGCG CGTCACCCTG GCGTCGGGCC TCCTTTTCGC CTGGTTCCTT
CTTTCGCACA GGGAACGGCT GCGGATCGCC CGCCGGGACA TCCTCTACTT TTTCATTCTG
GGCGCCGTCG GCATGGCCAC CCTGCAGTTC ACCTATTTCT ATGCCATCAG CAAGATCAAC
GTGGCCGTGG CCATTCTGCT GGAATATCTC GCGCCGGCCT TCATCGCCAT CTATTCGGTG
GTGTTTGCCG GGGAACGGCT GACGCGGCCG ACCCTGGCCG CGTTGGGAGG GTCGCTGGCC
GGCTGTTACC TGGCGGTGGG CGCCTACAAT TTCGACCTCC TGGCCATGAA CTGGAAAGGG
ATCGTGGTCG GGATCATCTC GGCGATCTCT TACGCCTGGT ACGCGGTGCA CGGGGAACAC
GGCATGAGGC GCTACGATCC CTGGACCGTG CTGTTCTACG CCCTGCTGTT TGCCGGCGTG
TGCTGGAACA TCGTGTTGCC GCCATTGAGC GCGTTCCGGT ACACGTACTC CTCCGTCGAG
TGGGCATGGA TTCTCTATAT CGGGGTCTTC GGGACGGCGA TTCCCTTCGG CCTCTATTCC
AAGGGAATCA GCCTGATACG GGCCACCCGG GCCAGCGTCA CGGCGACCCT GGAGCCCATT
GCCGCCGGCT TCGTCTCCTT CTTTTTCCTG GACGAGCGGT TGCAGCCGCT GCAGATCGCG
GGAGGTGTCC TGGTGATCGT GTCCATCCTG CTGCTGCAGA TGAGGAAGGA GTACGACGAC
AACACTGCCG CGCTGATCCG GGCGCGAAGG GGAGACCTCG ATACGTGA
|
|---|
| Protein sequence | MDQGAAVIPR RGYLYVIAAA LLWAVSGVSG KFLFQRGVTP MELVQLRVTL ASGLLFAWFL
LSHRERLRIA RRDILYFFIL GAVGMATLQF TYFYAISKIN VAVAILLEYL APAFIAIYSV
VFAGERLTRP TLAALGGSLA GCYLAVGAYN FDLLAMNWKG IVVGIISAIS YAWYAVHGEH
GMRRYDPWTV LFYALLFAGV CWNIVLPPLS AFRYTYSSVE WAWILYIGVF GTAIPFGLYS
KGISLIRATR ASVTATLEPI AAGFVSFFFL DERLQPLQIA GGVLVIVSIL LLQMRKEYDD
NTAALIRARR GDLDT
|
|---|
| |