| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1741 |
|---|
| Symbol | |
|---|
| ID | 4459958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 2128847 |
|---|
| End bp | 2132335 |
|---|
| Gene Length | 3489 bp |
|---|
| Protein Length | 1162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639702510 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_845863 |
|---|
| Protein GI | 116749176 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.616964 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00243499 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGCAA AGGGGGCAGT CTTCGGAGCA CTGTCCGATG CCGAACAACG TGCGCGGTCT
CTCGATCCGT CCGGGAGCTT TCATCTCGAA GCCCCGGCCG GTTCCGGCAA GACGTTCCTG
CTCACCGCCC GTTTCCTGCG TCTGCTCGGC CTGGTGGAAC ACCCGCAGCA GATCCTGGCC
ATGACGTTTA CCAACAAGGC CGCGAGCGAA ATGCGGGAAA GGGTGTGCCG ATATTTGCAG
CGCGCGAAGC GCGGCGAGCG TCCCGAGGCC GAGCCGGACG GCGAACTGCT CGATGCCGCC
GCGAAGGCAC TGGCACGCCA CCAAGCCCAC GAACCGCTCC TCATGGGAGG CGAGTTGCTG
CGCATTCAGA CCTTCCATTC GTTCTGCCAT GCGCTGGCGG CCCAGGCCCC CCTCGAAGCG
GGCATCGCAC CCGGCTCGAC CCTGATGGCG GAGCCGGAGC AGACCTTTTT CCTCCGGGAA
GTGATCGACG ATACACTGCG GGAGGTTGCG CTCCGCCGGC CTGAGGATCC CTGCCGCACG
GCCCTGGAAA GCCGGCTGCT CTACCTGAAC AATTCCTGGT GGCTGCTGGC CGCGGAGATG
GAGGGCCTGA TGCAACGCCG GGAGGTCCTC TACGACCTGA CGGCGGCACT TGACCGAACG
CGGACCGAGG ACTACGCCGC ACGGGCCGTC CGGGAGCTGG TTGAAGTCGA GCTCAGGGCG
TTGCGCGGCG CGTTTGCAGG GAGCCCTCTG GGGAAGGCCT GGGGTTCCTT TATCGAGGAT
CTCGAAAACC GGGGAGCCTC GGCCGGCACG GAGCTTCCCC GCCCGGTGCC CGGGGCGACG
TGGGAAGAAC TGCCCCAGTG GCGGCGCATT GCCGATGCGC TGCTCACGAA AGCCGGTGCG
CCGAGGAAGA GCTTCGGTCC TGCGAGCGGT TTCTATTCAG GGTTCGGGAA AACGCCATGG
TGCAACTTGG TCCGGGAACT GGAGGGAGAT ACCGCCGACC GGCTGCACCG CATCCGGGAA
CTCCCCGTCA AGGAGGCATC CAGGCCGGAT GCGGAGACGC TCTTCGACCT CATTCTCCTG
CTTCACGCGA TCATCGAGGC CTATGACGAA CGCTGCCGCA GCCGCCGGCT CCTCGATTTT
TCGGCCCTTG AAATGGCGGC CCTGAGGTTG TTCGACCAGG TCCGGCCCTC AGACCTCCAG
CTTCTGCTCG ATCACCGGGT AAGGCACGTG CTCGTGGACG AATTCCAGGA TACGAGCCGT
CAGCAGTGGC GACTGCTGCG GCACTTGTTC GAAGGCTGGG AGGCCGGCGA CGCAAAAACG
CTGTTCGTGG TGGGCGATCC GAAACAGTCG ATCTATGCGT TCCGCAAGGC AGAGGTGATG
CTGTTCACCG AAGCCAAGAA CGGATTGCCC ATCGACGAAC ACCGACGGCT TCCGCTGGAG
TCGCTCGTTC TCAGCACCAA TTTCCGCTCT CAGCCTCACC TCATCCAATG GGCCAACGGG
CTGTTCGGAC AAACGGTAAT GAGAGACCCC AGGCCGGAGA TCGATGAAGT CCCGTTCATT
CCGTCCGTTG CTTCCCCCGC CACCCGCCCG GTGGAATGCC CGGAACCTCC GGAGCTGGCG
CTCTTCAACG GCTGGCCGGC TCCGGCCGCG GCGCGGCGGC GGGAGGCGGA GTGGCTGGCC
CGGAACGTCT GGGAGGAAAC CAGGGAAAGT CCGGACACGC GAATCGGTGT CCTGCTGTTT
GCGAGAACGC ACCTGGCGAC CTACCTGGAA GCCTTTCAAC GCTGGAAAGT TCCCGTCCAG
GTGGCCGAGG GGCTGAAGCT CCTGGAACGC CCGGAGGTGA AGTATCTCCG GCAGCTGTGC
CGCGCCCTGG TGTTGCCCCA TGACGATCTC GCCTGGGCTT CGCAGCTTCA CAGTCCCTGG
CTGGTGCTGG GGTTCGACGA TCTTTACGCC GTTTCCCTCG AAACCGGGGA TTCCTGGGTC
GAGAAGATCC GGTCCTTTGC ACAGAAGGAC GAACGGGTTG CGGGCTTCTG GAATGGCCTG
GAGGCGGCCA GACGGCATCT CGGCCACGAA CCGCTCGCGG ATGTCATGGA AATCGCCTGG
CTCGACCTGG GCGGCGCGCG CATCGTTTCG CAACGCTGGG GCGGCCGCGG CCTGGCATGC
TGCCGTCGCT TCTTTCAGCT GATCCGGGAG GCGGAAACGC ACGAACCGGT CGAGACACTC
CGGCGCCTCG AAGAGCTCCT GGAAAACGCA TACGAGCCGG TGGACCCGGA AACGGCGCGA
TCCGGGGTGT CGGTCATGAC GGTGCACCGC GCCAAGGGCC TGGAATTCGA TTCCGTGTAC
CTGCCGTTTC TGGATTGGAA CCCGGTCGTT CGGCAGAGAA GCTCCCAGCA GCCGTATCTG
CTCGAACGCG TGCCGGGATC GGGCGAGCTT TTCCTGCTCG CAGCCCACCC CGACCGGCTG
AAGGGGGAGC CCGATCCGCT CTTTTCGTGG CTTGCGCGCC TGCAGGCGGA TCGCGCGTGG
GGGGAGGCGA AACGTCTCTT CTACGTGGCG GTGACGCGAT CCCGAACCCG GCTCCACTTG
AGCGGCGTTG TTCCCCTGAG GAAGAGCAGC GAAGAGTTGA TTTTTCCGCC AAAGTGTCCC
CTTGCATGGC TGAACGAGCA TTTCGACTTC TCCGAATCGC CTGGGGCTCA AGGCTTCTCA
CTTCCCGAGG GTTCCGAAGG CGGGGAGGTC CCTGCCGCCT GGCGTCGGGA ATGGAGCGCC
GGGGGGGACG CGCTTCGGGT TCTCGTCGAA CCGGCGCCGT CGAAGCCTCC CGCCGGCGCA
GCGGAAACGT ACGAACCGGT GGAGATTCAC CCGGCGGCGT TCGAGCGCGA GCGGCCCCTC
TTCAGAATCA CCAGCCCGTC GTCGCTCGCA CTCCCGTACG ACGAAGAAGA GGGCGAGGAG
GATTTTGAGC CCTCCGCTCC GTGGGAATCT CCGGAAACCT TGCCGCGTCT TCGAGGCACC
CTCGTCCATC GTTTGCTGGC GGATTTTGCC TGCGGGCGGA AACTGCCCTC CATCGAGGCG
ATCCGTTCCC GGCTCGGCAG GGAAGGGATG GATGCCGAGG GGGCGGGGGA GACGGCCCGT
TCCGTCCTGG CGGAAGTGGA GCGCTGTCTT GAGGACCCCT GGCTCAGTCC GTGCTTCGCT
CTTCCCCCGG ACCTGCTTTT CGTCGAATAT TCCCTGGAGA GTCTCCATGA TCCCCGGGAA
CTCCTCTCGG GCAAAATCGA CCTCGCGGCG TATCTCGACG GCAGATGGCG CCTGATCGAC
TACAAGACCT CTCGCGGGAA GGCCGGGGAA TCGGCGGAAA CGCTCTGCCG GAGGGAGTTG
GAGCGCTATG CTCCCCAGTT GGCGGCGTAT CGTCAAATGT GGGCCCGGCT CAGAGGCGTC
GAAGAAGGGG AAGTGGAGAT TTACGTTTAC CTGACCGCAT TCAACCTGCA CCGGAAGTCG
GCGGATTAG
|
|---|
| Protein sequence | MRAKGAVFGA LSDAEQRARS LDPSGSFHLE APAGSGKTFL LTARFLRLLG LVEHPQQILA
MTFTNKAASE MRERVCRYLQ RAKRGERPEA EPDGELLDAA AKALARHQAH EPLLMGGELL
RIQTFHSFCH ALAAQAPLEA GIAPGSTLMA EPEQTFFLRE VIDDTLREVA LRRPEDPCRT
ALESRLLYLN NSWWLLAAEM EGLMQRREVL YDLTAALDRT RTEDYAARAV RELVEVELRA
LRGAFAGSPL GKAWGSFIED LENRGASAGT ELPRPVPGAT WEELPQWRRI ADALLTKAGA
PRKSFGPASG FYSGFGKTPW CNLVRELEGD TADRLHRIRE LPVKEASRPD AETLFDLILL
LHAIIEAYDE RCRSRRLLDF SALEMAALRL FDQVRPSDLQ LLLDHRVRHV LVDEFQDTSR
QQWRLLRHLF EGWEAGDAKT LFVVGDPKQS IYAFRKAEVM LFTEAKNGLP IDEHRRLPLE
SLVLSTNFRS QPHLIQWANG LFGQTVMRDP RPEIDEVPFI PSVASPATRP VECPEPPELA
LFNGWPAPAA ARRREAEWLA RNVWEETRES PDTRIGVLLF ARTHLATYLE AFQRWKVPVQ
VAEGLKLLER PEVKYLRQLC RALVLPHDDL AWASQLHSPW LVLGFDDLYA VSLETGDSWV
EKIRSFAQKD ERVAGFWNGL EAARRHLGHE PLADVMEIAW LDLGGARIVS QRWGGRGLAC
CRRFFQLIRE AETHEPVETL RRLEELLENA YEPVDPETAR SGVSVMTVHR AKGLEFDSVY
LPFLDWNPVV RQRSSQQPYL LERVPGSGEL FLLAAHPDRL KGEPDPLFSW LARLQADRAW
GEAKRLFYVA VTRSRTRLHL SGVVPLRKSS EELIFPPKCP LAWLNEHFDF SESPGAQGFS
LPEGSEGGEV PAAWRREWSA GGDALRVLVE PAPSKPPAGA AETYEPVEIH PAAFERERPL
FRITSPSSLA LPYDEEEGEE DFEPSAPWES PETLPRLRGT LVHRLLADFA CGRKLPSIEA
IRSRLGREGM DAEGAGETAR SVLAEVERCL EDPWLSPCFA LPPDLLFVEY SLESLHDPRE
LLSGKIDLAA YLDGRWRLID YKTSRGKAGE SAETLCRREL ERYAPQLAAY RQMWARLRGV
EEGEVEIYVY LTAFNLHRKS AD
|
|---|
| |