Gene Sfum_1707 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1707 
Symbol 
ID4459994 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2087190 
End bp2088551 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content62% 
IMG OID639702476 
ProductDNA repair protein RadA 
Protein accessionYP_845829 
Protein GI116749142 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1066] Predicted ATP-dependent serine protease 
TIGRFAM ID[TIGR00416] DNA repair protein RadA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0112208 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.59861 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGGGTC TCAAGACGAT CTATCGATGT CAGCAGTGCG GCTACGTGAG CCCGAAATGG 
CTGGGCCGTT GTCCCGAGTG CCGGAGTTGG CAGAGTCTGG TGGAGGAGGT CACGCATAAG
GCTTCAGGGC GGTTGGAGCC CCATGGGCAA GCGGCTCGTC CCCTGCCCCT GGCGGAAATT
CCGATGGAGT CGGAAGCACG GTTCACCACA GGCATCGGTG AGTGGGACCG AGTGCTGGGA
GGAGGGCTGG TCAGCGGGTC CCTCATTCTG CTGGCAGGCG ACCCCGGCAT CGGGAAATCC
ACGCTCCTGC TCCAGGCGCT TGCCCTCATG TCGCAAAAGA AAAAGGTCCT CTACGTCTCC
GGTGAAGAGA GCCCGCAACA ACTGAAACTG CGGGCCGCAC GGCTGAGAAT CGAATCCGGA
GGACTGCTCA TCTTTTCCGA AACCTCCCTG GAGGCCGTCC TTGACGTCAT CGACCACTCG
CATCCGCAGA TCCTGGCGGT GGATTCCATT CAGACCATGC ACACCATGGG GCTCGAGGTC
GCTCCGGGTT CCATAAGCCA GGTCCGGGAA TGTGCGTTGC GGCTGATGCG CGCCGCAAAA
GACGGCAACA TCAGTATCTT CCTGGTCGGC CACGTCACCA AGGAAGGCTC CATCGCCGGT
CCCCGAGCCC TCGAACACCT TGTGGACACC GTTCTCTACC TTGAAGGGGA TCGCACGCAT
ACGTTCCGGC TGTTGCGAGC GGTCAAGAAC CGATATGGAT CAACCAACGA GGTCGGTGTG
TTCGAAATGA AGGAGGCGGG ATTGGAGGAA GTGCCGAATC CTTCTCAATT CCTTCTTGCG
GAACGGCCCA CGGGTGTATC CGGATCGGTG GTGGTGTGTT CGATGGAGGG CACCCGCCCC
TTGCTGGTGG AGCTGCAGGC GCTGGTCGGC GCCACCGGAT GGACCCAGCC CCGGCGGACC
AGCATGGGAA TCGATACCAA CCGGGTTTCC CTCCTGCTGG CGGTGCTCGA AAAGAAGCTC
GGGTTCAATT TCGGTCAACA GGATGTTTTC GTGAACGTGG CGGGAGGTGT CCGCCTGCAG
GAACCGGCCG CCGACCTCGC CCTGACGACG GCGCTGATGA GCTCTTACCT CGACCGGCCG
TTGCCCCAGG AACTGGCGGT GTGGGGCGAG GTCGGACTGG CGGGGGAAGT GCGCGGCGTG
GGGCATGGCG CGGCCCGGGC CATGGAAGCG GCAAAACTCG GGTTTACGCG CTGTCTCATG
CCGGGCAGCA ATGCCGAACG GCTTTCACCG GATGCGGGTG TCGTCTACAT GGGCGCTCGT
TCGCTACAGG ACGTTCTGCG GATGCTGTTT GACGGCACAT AG
 
Protein sequence
MGGLKTIYRC QQCGYVSPKW LGRCPECRSW QSLVEEVTHK ASGRLEPHGQ AARPLPLAEI 
PMESEARFTT GIGEWDRVLG GGLVSGSLIL LAGDPGIGKS TLLLQALALM SQKKKVLYVS
GEESPQQLKL RAARLRIESG GLLIFSETSL EAVLDVIDHS HPQILAVDSI QTMHTMGLEV
APGSISQVRE CALRLMRAAK DGNISIFLVG HVTKEGSIAG PRALEHLVDT VLYLEGDRTH
TFRLLRAVKN RYGSTNEVGV FEMKEAGLEE VPNPSQFLLA ERPTGVSGSV VVCSMEGTRP
LLVELQALVG ATGWTQPRRT SMGIDTNRVS LLLAVLEKKL GFNFGQQDVF VNVAGGVRLQ
EPAADLALTT ALMSSYLDRP LPQELAVWGE VGLAGEVRGV GHGAARAMEA AKLGFTRCLM
PGSNAERLSP DAGVVYMGAR SLQDVLRMLF DGT