| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1636 |
|---|
| Symbol | |
|---|
| ID | 4460073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 2008352 |
|---|
| End bp | 2008831 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639702405 |
|---|
| Product | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| Protein accession | YP_845758 |
|---|
| Protein GI | 116749071 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.546392 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0756261 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGTGG GATTCGGATA CGACGTGCAT GCATTTGTCG AGGGACGCCC CCTGGTGCTC
GGAGGGGTGA AGGTTCCGCA CGATCGCGGT CTGCTCGGTC ATTCGGATGC GGACGTGCTG
CTGCACGCCA TCTGTGACGC CCTCCTGGGG GGCGCGGCGC TGGGGGATAT CGGACGGCAT
TTCCCCGACA CCGATCCGCG CTTCAAGGGG ATATCGAGCC TGCTGCTGCT CCGGCAGACG
GTGGAACTCG TCCGTCGCGC GGGGTTCCGG ATCGCAAACA TCGATACGAC ACTGGTGTTG
CAGAAACCGC GCCTGGCGCC CTACATCGCC CGGATGGCGG AAGAAATCGG CCGTGCGACG
GACCTGCCCG TTTCTTCCGT CAACGTCAAG GCCACCACGA CCGAGAAGCT CGGGTTCGCC
GGACGCGAGG AAGGTGTTGC CGCATATGCC GTGGTGCTGT TGAGGAGCGA CGGCCGGTGA
|
|---|
| Protein sequence | MRVGFGYDVH AFVEGRPLVL GGVKVPHDRG LLGHSDADVL LHAICDALLG GAALGDIGRH
FPDTDPRFKG ISSLLLLRQT VELVRRAGFR IANIDTTLVL QKPRLAPYIA RMAEEIGRAT
DLPVSSVNVK ATTTEKLGFA GREEGVAAYA VVLLRSDGR
|
|---|
| |