| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1609 |
|---|
| Symbol | |
|---|
| ID | 4460109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 1959881 |
|---|
| End bp | 1961473 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639702376 |
|---|
| Product | ribonuclease |
|---|
| Protein accession | YP_845731 |
|---|
| Protein GI | 116749044 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCAG AGCTAATTAT CAACGGTAGC GCTTTTGAGA CTCGTGTGGC CCTGGTGGAA
AACGGCCAGG TGGCGGAGCT CCACATCGAG CGCAGCTCGG ATCGAGGGAT TGCCGGCAAC
ATCTACAAGG GACGCGTCGT CAAGGTGCTG CCCGGGATGC AGGCCGCCTT TGTCGATATC
GATCTGGAGA AGGCCGCCTT TCTGTATGTC AGCGACATCC ACCATCCCAT GGGCGACGTT
GAGCAACTGC TTCTGTCCAC GTGCGAGGTG GAACCGGACG TCGAAAAGGT CGACTCGGCC
AGGGAACCGG GCGCGCCCGA ATTCCAGGAC GTGCTTGATC TCCAGAGATA TTACAGCAGC
GTTCCCATCG AGGAGCGCCT CCAGGAAGGC CAGGAAATCC TGGTCCAGGT GGCCAAGGAA
CCGATCGGAC ACAAGGGCGC GCGCATCACG ACGCACATCA CGCTTCCCGG AAGGCATCTG
GTTTTCATGC CCACCATGGA TCACGTAGGG GTGTCGAGGC GCATCGAGAA CGAGGTGGAA
CGCAAGCGAC TCCGGGAAAT CATGTGCGAA ATCAAACCCT CCCACTGCGG GTTCATTGTG
AGGACCGCTG CGGAAGGAGC CGAACCGGAG AAGTTGCAGG TCGAAGTCGA TTTCCTCGTG
AAGGTCTGGC AGAACATTCA GCGCCGATTC GAAAGCGCAT CGGTTCCTTC CCTCGTTTAC
CAGGAATTGG ACATTACGCT GCGGGCCGTG CGCGATCTGT TCACAAAGGA AGTGGATCGG
CTCGTGATCG ATTCCCGGAG CGAGCACAAG AAAATCACGA ATTTCATTGA AACGTTCCTG
CCCGCCCTGC AGAGTTCCAT CGAGCTTTAC GAAGGGGATG AACCCATTTT CGACGCGTAC
GGCATCGAAA TGGAAGTCCA GCGGGCGCTG AGCAAGAAAA TCTGGTTGAA GTCCGGAGGC
TACATCGTCA TCGAGATGAC CGAAGCGCTC ACCGCCGTCG ACGTCAACAC CGGACGGTAC
GTGGGGAAGC GCAACCTGGA GGAGACTATT CTCAAGACCA ACCTGGAGGC GGTGAAGGAA
ATCGCATACC AGCTCAGGCT GCGCAACATC GGGGGAATCA TCATCATCGA TTTCATCGAC
ATGGAAAAGG AGAGCAACCG GGAAAAGGTG TGCAACGCCC TCAAAGACGC CATGCATAAG
GACAAGAGCA AGACCAACAT CCTTCACATG TCGGAACTGG GGCTCATCGA AATGACCCGC
AAGCGGACCC GGGAAAGCAT CGGGCAGGTG CTTTGCGAGC CGTGCTTCTA TTGCGAGGGC
GAGGGCTACC TGAAATCACG GCAGACGGTT TGTTACGAGA TCCTGCGGGA ATTGGAGCGC
GAGAAGCGTG ATCTGTACGG TCAGAATATC ATGGTGCTGG CGCATCCGGA GGTCGCCGCG
CGGTTCTGCG ACGAGGACCG GGGACCGCTC GAAAGAGTGG AGGAGACGCT CCATGCGCGC
ATAATGGTAA AGGGAGACCC GGGCTTTCAC CTGGAACAAT ACGAGATTGC GCCGCTCGAA
AGCGAGAAGC GTGTCGGGGA TGGCGTTTCT TGA
|
|---|
| Protein sequence | MSAELIINGS AFETRVALVE NGQVAELHIE RSSDRGIAGN IYKGRVVKVL PGMQAAFVDI
DLEKAAFLYV SDIHHPMGDV EQLLLSTCEV EPDVEKVDSA REPGAPEFQD VLDLQRYYSS
VPIEERLQEG QEILVQVAKE PIGHKGARIT THITLPGRHL VFMPTMDHVG VSRRIENEVE
RKRLREIMCE IKPSHCGFIV RTAAEGAEPE KLQVEVDFLV KVWQNIQRRF ESASVPSLVY
QELDITLRAV RDLFTKEVDR LVIDSRSEHK KITNFIETFL PALQSSIELY EGDEPIFDAY
GIEMEVQRAL SKKIWLKSGG YIVIEMTEAL TAVDVNTGRY VGKRNLEETI LKTNLEAVKE
IAYQLRLRNI GGIIIIDFID MEKESNREKV CNALKDAMHK DKSKTNILHM SELGLIEMTR
KRTRESIGQV LCEPCFYCEG EGYLKSRQTV CYEILRELER EKRDLYGQNI MVLAHPEVAA
RFCDEDRGPL ERVEETLHAR IMVKGDPGFH LEQYEIAPLE SEKRVGDGVS
|
|---|
| |