| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1575 |
|---|
| Symbol | secY |
|---|
| ID | 4460145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 1926726 |
|---|
| End bp | 1928033 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639702342 |
|---|
| Product | preprotein translocase subunit SecY |
|---|
| Protein accession | YP_845697 |
|---|
| Protein GI | 116749010 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0201] Preprotein translocase subunit SecY |
|---|
| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0569624 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTAACCG GTTTTGCCAA TATCGGTCGA ATTCCCGAAC TGAAACGTCG GATCTTGGTG
ACACTGGCTC TCCTGGCGGT TTACCGCGTT GGAGCGCACA TTCCGACTCC CGGCATCAAC
GGCGACGCCC TGGCGGCATT TTTCAAACAG CTTTCGGGAA CCTTGCTCGG GCTCTTCGAC
ATGTTTTCGG GGGGCGCCTT GAGTCAGCTC TCCGTTTTCT CGCTCGGCAT CATGCCTTAC
ATCAGCGCTT CGATTATCCT GCAGCTTCTG ACCGTGGTCA TTCCCACCCT GGAACGACTG
AGCAAGGAAG GGGATGCCGG GCGCCGCAAG ATCACTCAGT ATACCCGCTA TGGGACGGTG
ATTCTGAGCG TGATCCAGGG TTTCGCCATC GGGGTCGGCC TGGAGGGGAT GACCGGACCG
GGCGGCGAAA TCGTGGTGCT CCATCCCGGC TGGGGATTCC GCTTGACGAC CGTTCTCACG
CTCACCGCCG GTACCGCGTT CATCATGTGG CTGGGCGAAC AGATCACCGA GCGCGGCATA
GGAAACGGCA TCTCTCTGAT CATCTTCGCC GGCATCGTCG CGGGCATACC CAACGCCTTG
GAGAACACCG TCCGAATGGT GACCATGGGT GAGATGAGCG CATTCCTGCT CCTTGGCCTG
GCGGCCTTCA TGCTCGCGGT GGTGGCCGTC ATCATTTTCA TGGAGCGCGG GCAGCGACGG
ATACCGGTTC AATATGCCAA GCGCGTCGTT GGAAGGCGCG TTTACGGGGG GCAGAACACG
CACATCCCCC TCAAGATCAA CACCTCGGGT GTCATTCCAC CCATTTTCGC CTCCTCGATC
ATGATGTTCC CGGGAACCGT GGGCAGTTTC ATCAAGACTC CCTGGATGGA GTGGATCGCC
AACGCCCTGG GCCCGGGCCA GTGGCTCCAT TCGATTCTGT ATGTCGCGTT GATCGTGTTC
TTCTGCTTTT TTTACACGGC AATCGTTTTC AATCCCCTTG ACGTGGCCGA CAATATGAAG
AAATACGGCG GGTTCATTCC GGGAATACGT CCCGGTCGGC CCACGGCCGA ATACATCGAC
AAGGTGTTGA GCCGTATCAC CGTTGGAGGC GCCGTCTACA TTTCGGCGGT CTGCGTGCTG
CCCACGATAC TCATCTCGCG CTTTGCGGTC CCCTTCTATT TCGGCGGCAC GGCCCTGCTC
ATCGTCATCG GTGTGGCAAT GGATACCCTG GCTCAGATTG AAGCACACAT GCTCTCGCGA
CACTACGAAG GTTTTCTGAA AAAAGGACGC CTTCGTGGTC GAAGATGA
|
|---|
| Protein sequence | MLTGFANIGR IPELKRRILV TLALLAVYRV GAHIPTPGIN GDALAAFFKQ LSGTLLGLFD
MFSGGALSQL SVFSLGIMPY ISASIILQLL TVVIPTLERL SKEGDAGRRK ITQYTRYGTV
ILSVIQGFAI GVGLEGMTGP GGEIVVLHPG WGFRLTTVLT LTAGTAFIMW LGEQITERGI
GNGISLIIFA GIVAGIPNAL ENTVRMVTMG EMSAFLLLGL AAFMLAVVAV IIFMERGQRR
IPVQYAKRVV GRRVYGGQNT HIPLKINTSG VIPPIFASSI MMFPGTVGSF IKTPWMEWIA
NALGPGQWLH SILYVALIVF FCFFYTAIVF NPLDVADNMK KYGGFIPGIR PGRPTAEYID
KVLSRITVGG AVYISAVCVL PTILISRFAV PFYFGGTALL IVIGVAMDTL AQIEAHMLSR
HYEGFLKKGR LRGRR
|
|---|
| |