| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1484 |
|---|
| Symbol | |
|---|
| ID | 4461454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 1840267 |
|---|
| End bp | 1841007 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639702251 |
|---|
| Product | Sel1 domain-containing protein |
|---|
| Protein accession | YP_845608 |
|---|
| Protein GI | 116748921 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.743367 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.990393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAA ATCCGCAAAC CTTCAGTGCA AACCCCATGC TGAACAGGGT GAGGGCTGCT
TTTGCTCTTG CGCTGTGGCT GCTGCTTCTT GCGGTCATAC CGGTCCATGC CGGCATGAAG
TCCGGCATGG CGGCCTACAG GCGGGGCGAC TACGGGACCG CTCTCAGGGA GTTTCGGGCC
GGGGCCGCGC GCGGGAACAC GGATGCCCAG AAGATGCTCG CCGCCATGTA CGAAACGGGT
ACTGGGGTTA CGCGCGATTA CGGCGAAGCG TTCAAGTGGT ACTCCGCGGC CGCTCGAAGC
GGCGACAGTT CCGCGCAGTT CATGGTGGCG CAAATGTATT ACGAGGGCAG GGGCGGGCCC
AGGGACCTCT CCGAAGCGGT GACGTGGTAC CGCAAGGCCG CCGAGGGCGG GTTCCCCGAA
GCGCAGTACA ACCTCGCCCT CTTTCATGAA ATAGGCCGGG GAACGCAGCG GGACATGAAC
GAGGCCTCCA GGTGGTACCG CAAAGCGGCG GAAAAAGGCC TGCCGCAGGC GCAGGCCCGC
CTCGGCCTCA TGTATGTCAA GGGGGAAGGC GTCCTGCAGG ACTACGTCCA GGCCCACATG
TGGCTGAACC TTGCGGCTTC GAACGGCGAG GAAGGTGCCC GTAACGCCCT GGAAGCCCTC
AGCGCCAAAA TGACTTCGGA TCAGGTGGCC AAGGCTCAGG AAATGGCACG AAAATGGCAT
GCGAAAAAGA GGGGGAGGTG A
|
|---|
| Protein sequence | MKSNPQTFSA NPMLNRVRAA FALALWLLLL AVIPVHAGMK SGMAAYRRGD YGTALREFRA
GAARGNTDAQ KMLAAMYETG TGVTRDYGEA FKWYSAAARS GDSSAQFMVA QMYYEGRGGP
RDLSEAVTWY RKAAEGGFPE AQYNLALFHE IGRGTQRDMN EASRWYRKAA EKGLPQAQAR
LGLMYVKGEG VLQDYVQAHM WLNLAASNGE EGARNALEAL SAKMTSDQVA KAQEMARKWH
AKKRGR
|
|---|
| |