Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_1345 |
Symbol | |
ID | 4460515 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 1669365 |
End bp | 1670537 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639702113 |
Product | CRISPR-associated RAMP Csm5 family protein |
Protein accession | YP_845471 |
Protein GI | 116748784 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1332] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
TIGRFAM ID | [TIGR01899] CRISPR-associated RAMP protein, Csm5 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCAT ATCATTTCAA GGCTCAGGCA CTGACGCCAA TTCACATTGG TTCAGGAAAT GAAATTGATC CCTTGGAGTT TATCCTTGAA GGGAACAGGT TGGTCCGTTT TAACCCGGCT GATGTCGTCA ATGGGTTGTC TGGGGAAGAG CTGCGTCGAT ACTCGCAATT GGTGGAAAGG GCGGATCTCA AGGGAATCCA AGCCTTCTTA CGAACGCATC TCGACGCGGC GCATCACGAC CACGTTTATG TGGACGTCTC AAAGGAATTT AAAAGGCTGT TTGAGGAGAA AGCGAGCAAT CCTAGCAATC AATTCCGAGT GGACATGATG CCGCACAATC CTCATTCCGG CGCAGTATAT CTACCCGGTT CCTCCATTAA AGGTGCGATT CGCACTGCCG TAATCAATTA CTTCGCCAAT ATTGAACCGG CTACGAAGTC AACCGTTCAC CAGACCGTCG GGGCTGAACA AAATCTCAGG AACAAAGCAC GGATCTTGGA AGAATCCGCG CTTGACCGCC GTCACAGCCA AACGGAGCGA GATGTTCTTA GGCTCTTGGA TGTGCAGGAT GTCGACCTTC CAAACGACGC CACTCGCATT GACCGTGCGC TGAACTATAA CCCTCAAAAA CAGGGCTCAC AAGAGATCCA AATTTGGGTA GAGAGGGTCA AGGCCTTGGC GGATGGAGGC GGAGCGCCTC AGTTTGAGGT CACTTTGCAC CTGGACACAG CTGCCATGAA ACATCCAGGG ATGAAGGCTA CTCTGGGGAG AACACTTGAC TTTGACACCA TCCTTAGAGC GTGCAACCTT TTTTACTGGG GGAGAATGAC AGCCGAAGGA GAGAAATTCG ACCAAAAGAA GTCCGGTGGG AAATCCTGGA AAGCTCTGCA CGAGTTGTTT CCCAAGGGGA AGACCCCAGA TGGCCAGATA GTAGCCATTG ACCCGTCTAA GAACTACTGG TGTTACCCCC AAAGAAAACG CATGTTGCTC CGGGTCGGCC GATTCTCTCA TTTCGAGTCG CTCTCCGTTG ATGGTTTGAG GGAGGGGTAC AATATTCAGG CAAGAACCCC TATCGAAGAC ATGGGAGCCA CACGCACCCG ATGCTCCATG GAGAATGGCA GGCCAGCCAT GCCTTTTGGG TGGCTAATCC TCACTTTGGA AAGAACCCTG TAG
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Protein sequence | MSAYHFKAQA LTPIHIGSGN EIDPLEFILE GNRLVRFNPA DVVNGLSGEE LRRYSQLVER ADLKGIQAFL RTHLDAAHHD HVYVDVSKEF KRLFEEKASN PSNQFRVDMM PHNPHSGAVY LPGSSIKGAI RTAVINYFAN IEPATKSTVH QTVGAEQNLR NKARILEESA LDRRHSQTER DVLRLLDVQD VDLPNDATRI DRALNYNPQK QGSQEIQIWV ERVKALADGG GAPQFEVTLH LDTAAMKHPG MKATLGRTLD FDTILRACNL FYWGRMTAEG EKFDQKKSGG KSWKALHELF PKGKTPDGQI VAIDPSKNYW CYPQRKRMLL RVGRFSHFES LSVDGLREGY NIQARTPIED MGATRTRCSM ENGRPAMPFG WLILTLERTL
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